Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D24
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.22 
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    27   4.6  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   6.1  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 19/63 (30%), Positives = 22/63 (34%)
 Frame = +1

Query: 688  PXFXPXHYLPPLTXXFXYVPXXPXPLXPLPLXLXXPXHLXXPCSXPLXXPPXPXPXLXYP 867
            P   P    PP+      VP  P P    P+    P     P   P   PP P P +  P
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVP--KPSVAAPPVPVPSGAPPVPKPSVAAP 1150

Query: 868  PAP 876
            P P
Sbjct: 1151 PVP 1153



 Score = 30.7 bits (66), Expect = 0.28
 Identities = 16/54 (29%), Positives = 20/54 (37%)
 Frame = +1

Query: 715  PPLTXXFXYVPXXPXPLXPLPLXLXXPXHLXXPCSXPLXXPPXPXPXLXYPPAP 876
            PP+       P  P P   +P  +  P     P   P   PP P P +  PP P
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIP-PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211



 Score = 30.7 bits (66), Expect = 0.28
 Identities = 19/63 (30%), Positives = 22/63 (34%)
 Frame = +1

Query: 688  PXFXPXHYLPPLTXXFXYVPXXPXPLXPLPLXLXXPXHLXXPCSXPLXXPPXPXPXLXYP 867
            P   P   +PP+      VP  P P    P+    P     P   P   PP P P    P
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP--KPSVGVPPVPPPSTAPPVPTPSAGLP 1227

Query: 868  PAP 876
            P P
Sbjct: 1228 PVP 1230



 Score = 29.1 bits (62), Expect = 0.87
 Identities = 16/54 (29%), Positives = 19/54 (35%)
 Frame = +1

Query: 715  PPLTXXFXYVPXXPXPLXPLPLXLXXPXHLXXPCSXPLXXPPXPXPXLXYPPAP 876
            PP+       P  P P    P+    P     P   P   PP P P +  PP P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVP--KPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 129 MRLRPRYALKSCSPPTTPSIYLDMS-APHTQ 40
           +++ P   L S  PPTTP IY+  +   HTQ
Sbjct: 376 LKVAPVSELISVIPPTTPQIYISRTPVRHTQ 406


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 336 VCMRXWASQTYSTATRTG--DVSFVPNAQRRP 425
           VC+R W SQ+Y    + G  +V  +  +Q++P
Sbjct: 245 VCIRLWGSQSYLQEKKAGLAEVLNISTSQQKP 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,516
Number of Sequences: 5004
Number of extensions: 46937
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)