Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_D24
(877 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 127 1e-29
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 127 1e-29
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 124 8e-29
J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein. 124 8e-29
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 124 1e-28
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 124 1e-28
J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV) co... 124 1e-28
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 121 8e-28
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 121 8e-28
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 121 8e-28
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 33 0.35
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 32 0.47
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z19152-4|CAA79538.2| 455|Caenorhabditis elegans Hypothetical pr... 29 4.4
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 4.4
AY533305-1|AAS21307.1| 455|Caenorhabditis elegans BRE-3 protein. 29 4.4
AC006832-2|AAO38580.1| 366|Caenorhabditis elegans Hypothetical ... 29 4.4
AC006832-1|AAO38581.1| 376|Caenorhabditis elegans Hypothetical ... 29 4.4
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 5.8
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 5.8
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 5.8
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 28 7.6
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 127 bits (306), Expect = 1e-29
Identities = 58/102 (56%), Positives = 72/102 (70%), Gaps = 3/102 (2%)
Frame = +3
Query: 51 VPTCPDKWKELWVGYSFLMHTA-GADASGQSLISPGSCLREFRTRPFIECXGLGRCXYFA 227
VP CP W +W GYSF+MHTA GA+ +GQSL SPGSCL EFR PFIEC G G C Y+A
Sbjct: 1400 VPQCPQGWSGMWTGYSFVMHTAAGAEGTGQSLQSPGSCLEEFRAVPFIECHGRGTCNYYA 1459
Query: 228 TAVSYWLSTINDNWMFQKPIQETLKTD--KDSRVSRCTVCMR 347
T +WLS ++ + F+KP+ +TLK KD RVSRC VC++
Sbjct: 1460 TNHGFWLSIVDQDKQFRKPMSQTLKAGGLKD-RVSRCQVCLK 1500
Score = 66.1 bits (154), Expect = 3e-11
Identities = 38/98 (38%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +3
Query: 51 VPTCPDKWKELWVGYSFLMHTAGADASGQSLISPGSCLREFRTRPFIECXGLGRCXYFA- 227
VP CP +LW GYS L ASGQ L PGSCL +F T PF+ C C +
Sbjct: 1290 VPQCPPGASQLWEGYSLLYVQGNGRASGQDLGQPGSCLSKFNTMPFMFCNMNSVCHVSSR 1349
Query: 228 TAVSYWLSTINDNWMFQKPIQETLKTDKDSRVSRCTVC 341
S+WLST P+ T +SRC VC
Sbjct: 1350 NDYSFWLSTDEPMTPMMNPVTGTAIR---PYISRCAVC 1384
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 127 bits (306), Expect = 1e-29
Identities = 58/102 (56%), Positives = 72/102 (70%), Gaps = 3/102 (2%)
Frame = +3
Query: 51 VPTCPDKWKELWVGYSFLMHTA-GADASGQSLISPGSCLREFRTRPFIECXGLGRCXYFA 227
VP CP W +W GYSF+MHTA GA+ +GQSL SPGSCL EFR PFIEC G G C Y+A
Sbjct: 1657 VPQCPQGWSGMWTGYSFVMHTAAGAEGTGQSLQSPGSCLEEFRAVPFIECHGRGTCNYYA 1716
Query: 228 TAVSYWLSTINDNWMFQKPIQETLKTD--KDSRVSRCTVCMR 347
T +WLS ++ + F+KP+ +TLK KD RVSRC VC++
Sbjct: 1717 TNHGFWLSIVDQDKQFRKPMSQTLKAGGLKD-RVSRCQVCLK 1757
Score = 66.1 bits (154), Expect = 3e-11
Identities = 38/98 (38%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +3
Query: 51 VPTCPDKWKELWVGYSFLMHTAGADASGQSLISPGSCLREFRTRPFIECXGLGRCXYFA- 227
VP CP +LW GYS L ASGQ L PGSCL +F T PF+ C C +
Sbjct: 1547 VPQCPPGASQLWEGYSLLYVQGNGRASGQDLGQPGSCLSKFNTMPFMFCNMNSVCHVSSR 1606
Query: 228 TAVSYWLSTINDNWMFQKPIQETLKTDKDSRVSRCTVC 341
S+WLST P+ T +SRC VC
Sbjct: 1607 NDYSFWLSTDEPMTPMMNPVTGTAIR---PYISRCAVC 1641
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 124 bits (299), Expect = 8e-29
Identities = 57/102 (55%), Positives = 71/102 (69%), Gaps = 3/102 (2%)
Frame = +3
Query: 51 VPTCPDKWKELWVGYSFLMHTA-GADASGQSLISPGSCLREFRTRPFIECXGLGRCXYFA 227
VP CP W +W GYSF+MHTA GA+ +GQSL SPGSCL EFR PFIEC G G C Y+A
Sbjct: 1656 VPQCPQGWSGMWTGYSFVMHTAAGAEGTGQSLQSPGSCLEEFRAVPFIECHGRGTCNYYA 1715
Query: 228 TAVSYWLSTINDNWMFQKPIQETLKTD--KDSRVSRCTVCMR 347
T +W S ++ + F+KP+ +TLK KD RVSRC VC++
Sbjct: 1716 TNHGFWPSIVDQDKQFRKPMSQTLKAGGLKD-RVSRCQVCLK 1756
Score = 66.1 bits (154), Expect = 3e-11
Identities = 38/98 (38%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +3
Query: 51 VPTCPDKWKELWVGYSFLMHTAGADASGQSLISPGSCLREFRTRPFIECXGLGRCXYFA- 227
VP CP +LW GYS L ASGQ L PGSCL +F T PF+ C C +
Sbjct: 1546 VPQCPPGASQLWEGYSLLYVQGNGRASGQDLGQPGSCLSKFNTMPFMFCNMNSVCHVSSR 1605
Query: 228 TAVSYWLSTINDNWMFQKPIQETLKTDKDSRVSRCTVC 341
S+WLST P+ T +SRC VC
Sbjct: 1606 NDYSFWLSTDEPMTPMMNPVTGTAIR---PYISRCAVC 1640
>J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein.
Length = 313
Score = 124 bits (299), Expect = 8e-29
Identities = 57/102 (55%), Positives = 71/102 (69%), Gaps = 3/102 (2%)
Frame = +3
Query: 51 VPTCPDKWKELWVGYSFLMHTA-GADASGQSLISPGSCLREFRTRPFIECXGLGRCXYFA 227
VP CP W +W GYSF+MHTA GA+ +GQSL SPGSCL EFR PFIEC G G C Y+A
Sbjct: 211 VPQCPQGWSGMWTGYSFVMHTAAGAEGTGQSLQSPGSCLEEFRAVPFIECHGRGTCNYYA 270
Query: 228 TAVSYWLSTINDNWMFQKPIQETLKTD--KDSRVSRCTVCMR 347
T +W S ++ + F+KP+ +TLK KD RVSRC VC++
Sbjct: 271 TNHGFWPSIVDQDKQFRKPMSQTLKAGGLKD-RVSRCQVCLK 311
Score = 66.1 bits (154), Expect = 3e-11
Identities = 38/98 (38%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +3
Query: 51 VPTCPDKWKELWVGYSFLMHTAGADASGQSLISPGSCLREFRTRPFIECXGLGRCXYFA- 227
VP CP +LW GYS L ASGQ L PGSCL +F T PF+ C C +
Sbjct: 101 VPQCPPGASQLWEGYSLLYVQGNGRASGQDLGQPGSCLSKFNTMPFMFCNMNSVCHVSSR 160
Query: 228 TAVSYWLSTINDNWMFQKPIQETLKTDKDSRVSRCTVC 341
S+WLST P+ T +SRC VC
Sbjct: 161 NDYSFWLSTDEPMTPMMNPVTGTAIR---PYISRCAVC 195
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 124 bits (298), Expect = 1e-28
Identities = 56/103 (54%), Positives = 73/103 (70%), Gaps = 3/103 (2%)
Frame = +3
Query: 48 EVPTCPDKWKELWVGYSFLMHT-AGADASGQSLISPGSCLREFRTRPFIECXGL-GRCXY 221
++P CP W LW+GYSF MHT AGA+ GQSL SPGSCL +FR PFIEC G G C Y
Sbjct: 1650 QIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSLSSPGSCLEDFRATPFIECNGARGSCHY 1709
Query: 222 FATAVSYWLSTINDNWMFQKPIQETLKT-DKDSRVSRCTVCMR 347
FA S+WL+TI+++ F+ P +TLK+ + +RVSRC VC++
Sbjct: 1710 FANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQVCVK 1752
Score = 63.7 bits (148), Expect = 2e-10
Identities = 38/99 (38%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +3
Query: 48 EVPTCPDKWKELWVGYSFLMHTAGADASGQSLISPGSCLREFRTRPFIECXGLGRCXYFA 227
EVP CP+ +LW GYS L + Q L GSCL+ F T PF+ C C Y +
Sbjct: 1542 EVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFCDFNNVCNYAS 1601
Query: 228 -TAVSYWLSTINDNWMFQKPIQETLKTDKDSRVSRCTVC 341
SYWLST M P+ E + + +SRC VC
Sbjct: 1602 RNDKSYWLSTSEAIPMM--PVNE---REIEPYISRCAVC 1635
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 124 bits (298), Expect = 1e-28
Identities = 56/103 (54%), Positives = 73/103 (70%), Gaps = 3/103 (2%)
Frame = +3
Query: 48 EVPTCPDKWKELWVGYSFLMHT-AGADASGQSLISPGSCLREFRTRPFIECXGL-GRCXY 221
++P CP W LW+GYSF MHT AGA+ GQSL SPGSCL +FR PFIEC G G C Y
Sbjct: 1651 QIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSLSSPGSCLEDFRATPFIECNGARGSCHY 1710
Query: 222 FATAVSYWLSTINDNWMFQKPIQETLKT-DKDSRVSRCTVCMR 347
FA S+WL+TI+++ F+ P +TLK+ + +RVSRC VC++
Sbjct: 1711 FANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQVCVK 1753
Score = 63.7 bits (148), Expect = 2e-10
Identities = 38/99 (38%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +3
Query: 48 EVPTCPDKWKELWVGYSFLMHTAGADASGQSLISPGSCLREFRTRPFIECXGLGRCXYFA 227
EVP CP+ +LW GYS L + Q L GSCL+ F T PF+ C C Y +
Sbjct: 1543 EVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFCDFNNVCNYAS 1602
Query: 228 -TAVSYWLSTINDNWMFQKPIQETLKTDKDSRVSRCTVC 341
SYWLST M P+ E + + +SRC VC
Sbjct: 1603 RNDKSYWLSTSEAIPMM--PVNE---REIEPYISRCAVC 1636
>J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV)
collagen protein.
Length = 261
Score = 124 bits (298), Expect = 1e-28
Identities = 56/103 (54%), Positives = 73/103 (70%), Gaps = 3/103 (2%)
Frame = +3
Query: 48 EVPTCPDKWKELWVGYSFLMHT-AGADASGQSLISPGSCLREFRTRPFIECXGL-GRCXY 221
++P CP W LW+GYSF MHT AGA+ GQSL SPGSCL +FR PFIEC G G C Y
Sbjct: 153 QIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSLSSPGSCLEDFRATPFIECNGARGSCHY 212
Query: 222 FATAVSYWLSTINDNWMFQKPIQETLKT-DKDSRVSRCTVCMR 347
FA S+WL+TI+++ F+ P +TLK+ + +RVSRC VC++
Sbjct: 213 FANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQVCVK 255
Score = 64.1 bits (149), Expect = 1e-10
Identities = 38/99 (38%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +3
Query: 48 EVPTCPDKWKELWVGYSFLMHTAGADASGQSLISPGSCLREFRTRPFIECXGLGRCXYFA 227
EVP CP+ +LW GYS L + Q L GSCL+ F T PF+ C C Y +
Sbjct: 45 EVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFCDFNNVCNYAS 104
Query: 228 -TAVSYWLSTINDNWMFQKPIQETLKTDKDSRVSRCTVC 341
SYWLST M P+ E + + +SRC VC
Sbjct: 105 RNEKSYWLSTSEAIPMM--PVNE---REIEPYISRCAVC 138
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 121 bits (291), Expect = 8e-28
Identities = 55/103 (53%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Frame = +3
Query: 48 EVPTCPDKWKELWVGYSFLMHT-AGADASGQSLISPGSCLREFRTRPFIECXGL-GRCXY 221
++P CP W LW+GYSF MHT AGA+ GQS SPGSCL +FR PFIEC G G C Y
Sbjct: 1651 QIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSPSSPGSCLEDFRATPFIECNGARGSCHY 1710
Query: 222 FATAVSYWLSTINDNWMFQKPIQETLKT-DKDSRVSRCTVCMR 347
FA S+WL+TI+++ F+ P +TLK+ + +RVSRC VC++
Sbjct: 1711 FANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQVCVK 1753
Score = 64.1 bits (149), Expect = 1e-10
Identities = 38/99 (38%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +3
Query: 48 EVPTCPDKWKELWVGYSFLMHTAGADASGQSLISPGSCLREFRTRPFIECXGLGRCXYFA 227
EVP CP+ +LW GYS L + Q L GSCL+ F T PF+ C C Y +
Sbjct: 1543 EVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFCDFNNVCNYAS 1602
Query: 228 -TAVSYWLSTINDNWMFQKPIQETLKTDKDSRVSRCTVC 341
SYWLST M P+ E + + +SRC VC
Sbjct: 1603 RNEKSYWLSTSEAIPMM--PVNE---REIEPYISRCAVC 1636
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 121 bits (291), Expect = 8e-28
Identities = 55/103 (53%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Frame = +3
Query: 48 EVPTCPDKWKELWVGYSFLMHT-AGADASGQSLISPGSCLREFRTRPFIECXGL-GRCXY 221
++P CP W LW+GYSF MHT AGA+ GQS SPGSCL +FR PFIEC G G C Y
Sbjct: 1650 QIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSPSSPGSCLEDFRATPFIECNGARGSCHY 1709
Query: 222 FATAVSYWLSTINDNWMFQKPIQETLKT-DKDSRVSRCTVCMR 347
FA S+WL+TI+++ F+ P +TLK+ + +RVSRC VC++
Sbjct: 1710 FANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQVCVK 1752
Score = 64.1 bits (149), Expect = 1e-10
Identities = 38/99 (38%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +3
Query: 48 EVPTCPDKWKELWVGYSFLMHTAGADASGQSLISPGSCLREFRTRPFIECXGLGRCXYFA 227
EVP CP+ +LW GYS L + Q L GSCL+ F T PF+ C C Y +
Sbjct: 1542 EVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFCDFNNVCNYAS 1601
Query: 228 -TAVSYWLSTINDNWMFQKPIQETLKTDKDSRVSRCTVC 341
SYWLST M P+ E + + +SRC VC
Sbjct: 1602 RNEKSYWLSTSEAIPMM--PVNE---REIEPYISRCAVC 1635
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 121 bits (291), Expect = 8e-28
Identities = 55/103 (53%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Frame = +3
Query: 48 EVPTCPDKWKELWVGYSFLMHT-AGADASGQSLISPGSCLREFRTRPFIECXGL-GRCXY 221
++P CP W LW+GYSF MHT AGA+ GQS SPGSCL +FR PFIEC G G C Y
Sbjct: 1687 QIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSPSSPGSCLEDFRATPFIECNGARGSCHY 1746
Query: 222 FATAVSYWLSTINDNWMFQKPIQETLKT-DKDSRVSRCTVCMR 347
FA S+WL+TI+++ F+ P +TLK+ + +RVSRC VC++
Sbjct: 1747 FANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQVCVK 1789
Score = 64.1 bits (149), Expect = 1e-10
Identities = 38/99 (38%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +3
Query: 48 EVPTCPDKWKELWVGYSFLMHTAGADASGQSLISPGSCLREFRTRPFIECXGLGRCXYFA 227
EVP CP+ +LW GYS L + Q L GSCL+ F T PF+ C C Y +
Sbjct: 1579 EVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFCDFNNVCNYAS 1638
Query: 228 -TAVSYWLSTINDNWMFQKPIQETLKTDKDSRVSRCTVC 341
SYWLST M P+ E + + +SRC VC
Sbjct: 1639 RNEKSYWLSTSEAIPMM--PVNE---REIEPYISRCAVC 1672
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 32.7 bits (71), Expect = 0.35
Identities = 20/55 (36%), Positives = 21/55 (38%)
Frame = -3
Query: 875 GAGG*XRXGXGXGGXXSGXEXGXXRWXGXXRXRGRGYNGXGXXGT*XXXXVRGGR 711
G GG G G GG G + W G GRGY G G G GGR
Sbjct: 222 GGGGGYGSGGGWGGGGGGRDRDRGGWGGGGG--GRGYGGGGGGGGYGYGGGGGGR 274
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 32.3 bits (70), Expect = 0.47
Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = -3
Query: 875 GAGG*XRXGXGXGGXXSGXEXGXXRWXGXXRXRGR-GYNGXGXXG 744
G GG R G GG G G W G RG G NG G G
Sbjct: 53 GGGGWGRGGGRGGGDWGGNNGGGGNWGGNGGGRGDWGGNGGGGRG 97
Score = 28.7 bits (61), Expect = 5.8
Identities = 21/65 (32%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Frame = -3
Query: 875 GAGG*XRXGXGXGGXXSGXEXGXXRWXGXXRXRG--RGYNGXGXXGT*XXXXVRGGR**X 702
G GG R G G G G W G G G NG G G GR
Sbjct: 90 GNGGGGRGGGGRGDWGGNNNGGGGNWGGGGNNDGGWGGNNGGGGGGRGGGGRGGDGRGPP 149
Query: 701 GQNXG 687
G N G
Sbjct: 150 GSNGG 154
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/40 (42%), Positives = 18/40 (45%)
Frame = -3
Query: 872 AGG*XRXGXGXGGXXSGXEXGXXRWXGXXRXRGRGYNGXG 753
+GG R G G GG G G W G R G G NG G
Sbjct: 40 SGGWGRPGWGGGGPGWGRGGGGSGW-GGGRGGGWGNNGGG 78
>Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical
protein F35E8.7 protein.
Length = 288
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 356 ISDV*HRNENR*C*LCTQRPTTTFPWAKPYRQSTTVAP 469
+ D + N + C CT PT T A P +TTVAP
Sbjct: 175 LQDFVNANCRKTCKRCTSGPTATTSTAAPAAPTTTVAP 212
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/64 (23%), Positives = 24/64 (37%)
Frame = +1
Query: 679 LTYPXFXPXHYLPPLTXXFXYVPXXPXPLXPLPLXLXXPXHLXXPCSXPLXXPPXPXPXL 858
+ +P P +PP+ P + P+P + P + P PP P P +
Sbjct: 115 MPFPQHFPFPGMPPMPSG-PPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYPPAPAPGV 173
Query: 859 XYPP 870
PP
Sbjct: 174 YMPP 177
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/64 (23%), Positives = 24/64 (37%)
Frame = +1
Query: 679 LTYPXFXPXHYLPPLTXXFXYVPXXPXPLXPLPLXLXXPXHLXXPCSXPLXXPPXPXPXL 858
+ +P P +PP+ P + P+P + P + P PP P P +
Sbjct: 115 MPFPQHFPFPGMPPMPSG-PPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYPPAPAPGV 173
Query: 859 XYPP 870
PP
Sbjct: 174 YMPP 177
>Z19152-4|CAA79538.2| 455|Caenorhabditis elegans Hypothetical
protein B0464.4 protein.
Length = 455
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 83 VGGLQLFNAYRGRRRIRTEPHLTWFMLTRV 172
+GGL +FNA+R + +++ P L+ F+ RV
Sbjct: 70 LGGLMMFNAFREKVQLKAAPLLSPFVCFRV 99
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 754 PXPLXPLPLXLXXPXHLXXPCSXPLXXPPXPXPXLXYPPAP 876
P P+ P+P+ P C P PP P P + PP P
Sbjct: 46 PMPM-PMPVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPPP 85
>AY533305-1|AAS21307.1| 455|Caenorhabditis elegans BRE-3 protein.
Length = 455
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 83 VGGLQLFNAYRGRRRIRTEPHLTWFMLTRV 172
+GGL +FNA+R + +++ P L+ F+ RV
Sbjct: 70 LGGLMMFNAFREKVQLKAAPLLSPFVCFRV 99
>AC006832-2|AAO38580.1| 366|Caenorhabditis elegans Hypothetical
protein ZK355.2a protein.
Length = 366
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 297 LKTDKDSRVSRCTVCMRXWASQTYSTATRTGDVSFVPNAQRRPFRGPS-PTGRVPRWHRX 473
L++D D + + W+S R DV V N +R PS P VP +
Sbjct: 301 LRSDSDEDSAESSTASSTWSSNHSRNNVRIADVITVRNWRRATAHSPSLPPQNVPSFTPN 360
Query: 474 GYRV 485
G R+
Sbjct: 361 GVRI 364
>AC006832-1|AAO38581.1| 376|Caenorhabditis elegans Hypothetical
protein ZK355.2b protein.
Length = 376
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 297 LKTDKDSRVSRCTVCMRXWASQTYSTATRTGDVSFVPNAQRRPFRGPS-PTGRVPRWHRX 473
L++D D + + W+S R DV V N +R PS P VP +
Sbjct: 311 LRSDSDEDSAESSTASSTWSSNHSRNNVRIADVITVRNWRRATAHSPSLPPQNVPSFTPN 370
Query: 474 GYRV 485
G R+
Sbjct: 371 GVRI 374
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Frame = +1
Query: 739 YVPXXPXPLXPLPLX-LXXPXHLXXPCSXPLXXPPXPXPXLXYPPAP 876
YVP P P P P P + PC P PP P PP P
Sbjct: 83 YVPPAPLPPPPPPASPCCGPSPVPAPCCPP---PPAPAAPCCPPPPP 126
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = +1
Query: 745 PXXPXPLXPLPLXLXXPXHLXXPCSXPLXXPPXPXPXLXYPPAP 876
P PL P PL L P + P PP P P + PP P
Sbjct: 69 PTESPPLPPPPLPLSNPP------AKPTPPPPPPKPTIRPPPIP 106
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = +1
Query: 745 PXXPXPLXPLPLXLXXPXHLXXPCSXPLXXPPXPXPXLXYPPAP 876
P PL P PL L P + P PP P P + PP P
Sbjct: 291 PTESPPLPPPPLPLSNPP------AKPTPPPPPPKPTIRPPPIP 328
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +1
Query: 745 PXXPXPLXPLPLXLXXPXHLXXPCSXPLXXPPXPXPXLXYPPAP 876
P PL P P+ P + PC+ P P P PAP
Sbjct: 42 PPQYAPLPPPPMPAPAPAYNPYPCANPPCIVVEPMPVAPPAPAP 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,032,401
Number of Sequences: 27780
Number of extensions: 298500
Number of successful extensions: 891
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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