Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D21
         (866 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0873 - 32372143-32372287,32372678-32372754,32372863-323730...    38   0.014
01_01_0556 + 4090432-4090500,4091414-4092030,4092408-4092533,409...    31   1.2  
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442...    31   1.6  
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312     31   1.6  
07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910...    30   2.8  
02_01_0146 + 1046247-1046511,1046702-1046865,1047205-1047498           29   6.4  

>02_05_0873 -
           32372143-32372287,32372678-32372754,32372863-32373072,
           32374645-32374869
          Length = 218

 Score = 37.5 bits (83), Expect = 0.014
 Identities = 33/181 (18%), Positives = 68/181 (37%), Gaps = 5/181 (2%)
 Frame = +3

Query: 216 ELPDSAEECFYQTMDKDTAASLEYQVI----SGGQYDVSVKIEAPNRQIIYQQEKMXYDS 383
           +LP S  +C  + +  +     +Y ++          ++VK+ +P    ++  E      
Sbjct: 35  DLPQSGTKCVSEEIQSNVVVLADYALMYESHPSSHPTIAVKVTSPYGNTLHHNENATVGQ 94

Query: 384 HQFTALASGDYKVCF-SNEFSTFSHKLVYMELNVGPEQPLPGVGDXATVLTQLETSAEEI 560
             FT   +G+Y  CF  +     S   + ++  +G       V      +  +E    ++
Sbjct: 95  FAFTTSEAGNYLACFWIDSAEKGSGISINLDWKIGIAAKDWDVIAKKEKIEGVELELRKL 154

Query: 561 HSALNRIIDHQTHHXLREAXGRKRAEDLXXXVFWWSMGXTXAIVCVAFTPVMILXNFFXD 740
             A+  I  +  +   REA  R  +E     V W+S+      + V+   +  L  +F  
Sbjct: 155 EVAVQSIHQNMIYLKAREAEMRTVSEKTNARVAWFSILSLSVCIVVSILQLWHLQGYFQK 214

Query: 741 K 743
           K
Sbjct: 215 K 215


>01_01_0556 +
           4090432-4090500,4091414-4092030,4092408-4092533,
           4092619-4092895,4093021-4093251
          Length = 439

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 257 GQGYGCFIGVPSNFWRTV*RKRKNRSS*QTNYISARED 370
           G   GC   +P  +WR + R R+N     TN +S+  D
Sbjct: 158 GYTIGCVATLPHLYWRFLHRNRQNTEQESTNQVSSERD 195


>09_04_0359 +
           16941904-16942110,16943636-16943785,16944084-16944293,
           16944376-16944452,16944554-16944698
          Length = 262

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 306 QYDVSVKIEAPNRQIIYQQEKMXYDSHQFTALASGDYKVCFS 431
           ++    K+ +P   I++ ++K+      FT   +G+Y  CFS
Sbjct: 113 RFGTPAKVTSPFGDIVHHKQKVSTGQFSFTTAEAGNYLACFS 154


>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
          Length = 232

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +3

Query: 267 TAASLEYQVISGGQYDVSVKIEAPNRQIIYQQEKMXYDSHQFTALASGDYKVCF 428
           +++S   Q +    + VS+++ +P    ++  E +   +  FTA  +GDY  CF
Sbjct: 70  SSSSSSAQPLLPESHRVSLRVTSPYGNSLHYSENVQSGNFAFTASEAGDYLACF 123


>07_03_1385 +
           26189034-26189294,26189427-26189636,26191016-26191092,
           26191196-26191340
          Length = 230

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 315 VSVKIEAPNRQIIYQQEKMXYDSHQFTALASGDYKVCF 428
           +S+++ +P    ++  E +   +  FTA  +GDY  CF
Sbjct: 84  ISLRVTSPYGNSVHYAENVPSGNFAFTATEAGDYLACF 121


>02_01_0146 + 1046247-1046511,1046702-1046865,1047205-1047498
          Length = 240

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = +3

Query: 186 VLSKSVELTFELPDSAEECFYQTMDKDTAASLEYQVISGGQYDVSVKIEAPNRQIIYQQE 365
           +LSKS+ L     + A E F Q    D+ A  E+       YD  VK+  PN   +    
Sbjct: 175 LLSKSIFLISAGGNDAFEFFSQNKSPDSTAIQEFCEAFISTYDSHVKVRDPNYDPVPSSF 234

Query: 366 KM 371
           KM
Sbjct: 235 KM 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,292,607
Number of Sequences: 37544
Number of extensions: 298790
Number of successful extensions: 711
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)