Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D21
         (866 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039713-7|AAB96722.1|  203|Caenorhabditis elegans Hypothetical ...   195   3e-50
AF014940-5|AAB63937.1|  203|Caenorhabditis elegans Suppressor/en...    80   2e-15
Z68316-4|CAA92683.1|  234|Caenorhabditis elegans Hypothetical pr...    73   2e-13
AL117207-7|CAB60397.1|  211|Caenorhabditis elegans Hypothetical ...    44   1e-04
AF040653-3|ABS83855.1|  390|Caenorhabditis elegans Hypothetical ...    29   5.7  
U64845-6|AAC48028.1|  556|Caenorhabditis elegans Hypothetical pr...    28   9.9  
AC024801-12|AAF59643.4|  569|Caenorhabditis elegans Hypothetical...    28   9.9  

>AF039713-7|AAB96722.1|  203|Caenorhabditis elegans Hypothetical
           protein F57B10.5 protein.
          Length = 203

 Score =  195 bits (476), Expect = 3e-50
 Identities = 96/203 (47%), Positives = 126/203 (62%), Gaps = 1/203 (0%)
 Frame = +3

Query: 150 LLFTILITIINGVLSKSVELTFELPDSAEECFYQTMDKDTAASLEYQVISGGQYDVSVKI 329
           +L  ++++ I   L  S+ELTFELPD+A +CFY+ + KD     E+QV++GG YDV + I
Sbjct: 1   MLKFVIVSSILVALGLSIELTFELPDNANQCFYEDLKKDVDTVFEFQVVTGGHYDVDLII 60

Query: 330 EAPNRQIIYQQEKMXYDSHQFTALASGDYKVCFSNEFSTFSHKLVYMELNVGPEQPL-PG 506
           E PN +++Y+  K  YDS  F A   G YK CFSNEFSTFSHK+VYM+   G +  L   
Sbjct: 61  EDPNGKVLYKDTKKQYDSINFKAEVEGTYKACFSNEFSTFSHKIVYMDWQFGDQNALHAA 120

Query: 507 VGDXATVLTQLETSAEEIHSALNRIIDHQTHHXLREAXGRKRAEDLXXXVFWWSMGXTXA 686
           V   A  +TQLE  A  I   L  I D+QTHH LREA GRKRAE+L   V  WS+G +  
Sbjct: 121 VTQGAHAMTQLENYAVAIGDKLRTIDDYQTHHRLREATGRKRAEELNERVMIWSLGQSAV 180

Query: 687 IVCVAFTPVMILXNFFXDKPTLY 755
           +V +    V +L +FF DK T Y
Sbjct: 181 VVFIGIGQVFLLKSFFNDKRTRY 203


>AF014940-5|AAB63937.1|  203|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein9 protein.
          Length = 203

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 3/170 (1%)
 Frame = +3

Query: 234 EECFYQTMDKDTAASLEYQVISGGQYDVSVKIEAPNRQIIYQQEKMXYDSHQFTALASGD 413
           E+CF+  +   T   L ++V  GG  D+ VKI  P+ + IY+ E+       F A   G 
Sbjct: 28  EQCFFDRLTSGTKMGLMFEVAEGGFLDIDVKITGPDNKEIYKGERESSGKFTFAAHMDGV 87

Query: 414 YKVCFSNEFSTFSHKLVYMELNV-GPEQPLPG--VGDXATVLTQLETSAEEIHSALNRII 584
           Y  CF N+ ST + K V   + +  P Q  PG      A    +LE    E+ SAL  + 
Sbjct: 88  YTYCFGNKMSTMTPKAVMFTVEITEPHQQAPGAAANQDAADNAKLEEMVRELSSALMSVK 147

Query: 585 DHQTHHXLREAXGRKRAEDLXXXVFWWSMGXTXAIVCVAFTPVMILXNFF 734
             Q +  +RE   R   E+    V  W+      +V +    +  L  FF
Sbjct: 148 HEQEYMEVRERVHRNINENTNSRVVMWAAFEAFVLVGMTVGQIFYLKRFF 197


>Z68316-4|CAA92683.1|  234|Caenorhabditis elegans Hypothetical
           protein K08E4.6 protein.
          Length = 234

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 19/215 (8%)
 Frame = +3

Query: 153 LFTILITIINGVLSKSVELTFELPDSAEECFYQTMD--KDTAASLEYQVISGGQYDVSVK 326
           + T+++ I   +L    + T E+P    +CF+Q +D  K     ++YQVI GG  +++  
Sbjct: 7   IITVILLITPFILCGEYDFTVEVPAGKFQCFFQPVDLAKHKTLEVDYQVIDGGDLNINFM 66

Query: 327 IEAPNRQIIYQQEKMXYDSHQFTALASGDYKVCFSNEFSTFSHKLVYMELNVG------P 488
           I      I+ Q +     SH+      GDY+VCF N FS  S K+V+ E+ +        
Sbjct: 67  I-LHGANILKQDQLKVDGSHRIELNQPGDYQVCFDNSFSYQSRKVVFFEIFLFDAHGNLD 125

Query: 489 EQPLPGV----GDXATVLTQLETSAEEIH-------SALNRIIDHQTHHXLREAXGRKRA 635
           E  L  +     D +  + +L  + +E H       + LN++  HQ      EA  R   
Sbjct: 126 EADLSAMARTDSDLSAKMNELGVTIDEFHRRANGIKNNLNKVEYHQALLRAHEARDRAVM 185

Query: 636 EDLXXXVFWWSMGXTXAIVCVAFTPVMILXNFFXD 740
                 V +WS+  T  +V VA   V ++ + F +
Sbjct: 186 SANFDRVTFWSVVHTLVMVGVAGVQVFMIRSLFEE 220


>AL117207-7|CAB60397.1|  211|Caenorhabditis elegans Hypothetical
           protein Y60A3A.9 protein.
          Length = 211

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 40/207 (19%), Positives = 89/207 (42%), Gaps = 13/207 (6%)
 Frame = +3

Query: 162 ILITIINGVLSKSVELTFELPDSAEECFYQTMDKDTAASLEYQV------ISG-GQYD-- 314
           +LI +++ + + +  L F + ++ ++CF + +  +T  +  Y+V        G G Y   
Sbjct: 3   LLIALLS-LATYADSLYFHIAETEKKCFIEEIPDETMVTGNYKVQLYDPNTKGYGDYPNI 61

Query: 315 -VSVKIEAPNRQIIYQQEKMXYDSHQFTALASGDYKVC-FSNEFSTFSHKLVYMELNVGP 488
            + V+++ P  ++I  +         FT+   G++ +C +SN  + F+   + + L++  
Sbjct: 62  GMHVEVKDPEDKVILSKLYTAEGRFTFTSNTPGEHVICIYSNSTAWFNGAQLRVHLDIQA 121

Query: 489 EQPLPGVGDXATV--LTQLETSAEEIHSALNRIIDHQTHHXLREAXGRKRAEDLXXXVFW 662
                     A    L +L+    ++   +++I   Q +   RE   R+ +E     VF+
Sbjct: 122 GDHAQDYAQIAQKDKLNELQLRIRQLLDQVDQITKEQNYQRYREERFRQTSESTNSRVFY 181

Query: 663 WSMGXTXAIVCVAFTPVMILXNFFXDK 743
           WS+     +       +  L  FF  K
Sbjct: 182 WSIAQVVVLAITGAWQMRHLRGFFEAK 208


>AF040653-3|ABS83855.1|  390|Caenorhabditis elegans Hypothetical
           protein K05F6.4 protein.
          Length = 390

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 464 VYGTKCWTGAASSWCRRSCNCSYTVGDXCRRNSFCTQQNH 583
           ++ T  W+  A   C RS + S +  D  R + FCT  +H
Sbjct: 18  IFNTLPWSAIAVHPCLRSWHSSNSGADSKRADVFCTTHSH 57


>U64845-6|AAC48028.1|  556|Caenorhabditis elegans Hypothetical
           protein F45F2.5 protein.
          Length = 556

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +3

Query: 96  YFCTFKGFLINDKMFTAPLLFTILITIINGVLSKSVELTFELPDSAEECFYQT 254
           Y C      INDKM   P  +  +++    +    V+  F L  +   C+ QT
Sbjct: 408 YSCAGMDLYINDKMIKEPASYITIVSFTLRITEVLVQTIFILIATRMRCYTQT 460


>AC024801-12|AAF59643.4|  569|Caenorhabditis elegans Hypothetical
           protein Y50D7A.8 protein.
          Length = 569

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
 Frame = +3

Query: 396 ALASGDYKVCFSNEFSTFSHKLVYMELNVGPEQPLPGVGDXATVLTQLETS----AEEIH 563
           A A   Y+    NE   ++H+    +L V PE    G  D   V TQ++ +    AE   
Sbjct: 142 AAARSRYQRMTENERRVYNHRRRLKQLGVDPEH---GTNDVEGVRTQMKQANAKKAEAAR 198

Query: 564 SALNRIIDHQT---HHXLREAXGRKRAED 641
              +R+   Q    +H   EA  R+R E+
Sbjct: 199 QRYHRMTPEQKRDYNHRRTEAFRRRRHEE 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,706,180
Number of Sequences: 27780
Number of extensions: 294633
Number of successful extensions: 803
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)