Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D20
         (926 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043724-1|AAC39862.1|  359|Homo sapiens hepatitis A virus cellu...    32   3.4  
BC028228-1|AAH28228.1|  340|Homo sapiens FLJ40125 protein protein.     31   5.9  
AK097444-1|BAC05056.1|  340|Homo sapiens protein ( Homo sapiens ...    31   5.9  

>AF043724-1|AAC39862.1|  359|Homo sapiens hepatitis A virus cellular
           receptor 1 protein.
          Length = 359

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 182 TPXQATAPHLLTTARTSLILPKXTTLMETATNLSTTVHITWTVP---KADLTSSLP 340
           TP   T P  +TT RTS  +P  TT+  T    + ++  T TVP       T+S+P
Sbjct: 132 TPIVTTVP-TVTTVRTSTTVPTTTTVPTTTVPTTMSIPTTTTVPTTMTVSTTTSVP 186


>BC028228-1|AAH28228.1|  340|Homo sapiens FLJ40125 protein protein.
          Length = 340

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = -3

Query: 294 CTVVDRFVAVSIRVVXFGRINDVRAVVNRCGAVA*XGVXHDPXRGLER 151
           CT V   + VS R +      D RAV++R GAVA     H P R  ER
Sbjct: 85  CTAV--VLLVSPRFLYLAHCGDSRAVLSRAGAVAFSTEDHRPLRPRER 130


>AK097444-1|BAC05056.1|  340|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40125 fis, clone TESTI2010872, weakly similar to
           PROTEIN PHOSPHATASE 2C BETA ISOFORM (EC 3.1.3.16). ).
          Length = 340

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = -3

Query: 294 CTVVDRFVAVSIRVVXFGRINDVRAVVNRCGAVA*XGVXHDPXRGLER 151
           CT V   + VS R +      D RAV++R GAVA     H P R  ER
Sbjct: 85  CTAV--VLLVSPRFLYLAHCGDSRAVLSRAGAVAFSTEDHRPLRPRER 130


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,171,375
Number of Sequences: 237096
Number of extensions: 983621
Number of successful extensions: 5345
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5345
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12103451996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)