Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D19
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    66   8e-12
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   5.9  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 65.7 bits (153), Expect = 8e-12
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
 Frame = +1

Query: 202 RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSD 381
           ++   G I+E I T+IPA  LI +A                 +T+K+IG Q +  YE +D
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELND 128

Query: 382 F-----NNIEFDSYIIPSNEIKNNEFRLLDVDNRIILP 480
           F       + FDSY++P  +++    R L+VDNR++LP
Sbjct: 129 FVTNENEPVSFDSYMVPEEDLEEGSLRQLEVDNRLVLP 166



 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 20/50 (40%), Positives = 29/50 (58%)
 Frame = +2

Query: 485 NNQIRIIITATDVIHS*TIPSLXVXVDAXPGRLXXXXFFIXRPXIXFGXC 634
           + +IR+I+T+ DVIHS  +PSL +  D  P RL      I R  + +G C
Sbjct: 168 DTRIRLILTSGDVIHSWAVPSLGIKCDCIPSRLNQVSLSIDREGLFYGQC 217


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 6/48 (12%)
 Frame = -1

Query: 497  EFG---CLXGKIIRLSTSNSRNSLFFISLDG---IIYESNSILLKSEY 372
            EFG   CL    +  S +++RN++F++++ G    ++E+ S+L  +E+
Sbjct: 1102 EFGLQSCLASPNLPPSINSNRNNVFYLNIPGNECYLFEAPSVLAMNEW 1149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,496,032
Number of Sequences: 5004
Number of extensions: 21425
Number of successful extensions: 48
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)