Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_D17
(932 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.058
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 30 0.54
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 0.94
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 29 0.94
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 0.99
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 23 1.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.9
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 5.0
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.1 bits (72), Expect = 0.058
Identities = 20/40 (50%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -1
Query: 884 GXXGGXGGXXXG-GGEGGGXXVFXGG---GGGXPPXXGGG 777
G GG GG G GG GGG F GG GG P GGG
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
Score = 31.9 bits (69), Expect = 0.13
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -1
Query: 848 GGEGGGXXVFXGGGGGXPPXXGG 780
G GGG F GG GG PP GG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGG 206
Score = 31.9 bits (69), Expect = 0.13
Identities = 21/50 (42%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Frame = -1
Query: 902 GXVXXXGXXGGXGGXXXG-GGEGGGXXVFXGGGGGX---PPXXGGGXXXF 765
G G GG G G GG GGG F GG GG P GGG F
Sbjct: 205 GGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/35 (48%), Positives = 17/35 (48%)
Frame = -1
Query: 884 GXXGGXGGXXXGGGEGGGXXVFXGGGGGXPPXXGG 780
G GG GG GGG GG F GG GG GG
Sbjct: 239 GFGGGPGGF--GGGLGG----FGGGPGGFGGGPGG 267
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 849 GGGGGGXXXFXGGGGXXPP 793
G GGG F GG G PP
Sbjct: 184 GHNGGGFGGFGGGSGGPPP 202
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.9 bits (64), Expect = 0.54
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -1
Query: 884 GXXGGXGGXXXG-GGEGGGXXVFXGGGGGXPPXXGGG 777
G GG GG G GG GGG GGG G GG
Sbjct: 13 GSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGG 49
Score = 29.5 bits (63), Expect = 0.71
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -1
Query: 884 GXXGGXGGXXXGGGEGGGXXVFXGGGGGXPPXXGG 780
G GG GG GG GGG GG GG GG
Sbjct: 23 GGRGGFGGGR-GGARGGGRGGARGGRGGRGGARGG 56
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Frame = -1
Query: 911 FFXGXVXXXGXXGGXGGXXXGGGEG--GGXXVFXGGGGGXPPXXGG 780
F G G GG G GG G GG GG GG GG
Sbjct: 21 FNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.1 bits (62), Expect = 0.94
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = -1
Query: 884 GXXGGXGGXXXGGGEGGGXXVFXGG--GGGXPPXXGGGXXXF 765
G GG GG GG GG F GG GG GG F
Sbjct: 149 GSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGF 190
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 29.1 bits (62), Expect = 0.94
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 875 GGXGGXXXGGGEGGGXXVFXGGGGGXP 795
GG G GGG GG GGGG P
Sbjct: 157 GGFGTRTRGGGMPGGFANMFGGGGAGP 183
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = -3
Query: 930 GGGLXXFFXGXXXGXXXXGXGGXXVXGGGGGGGXXXFXGGGGXXP 796
GGG+ G G G GGG GG GGGG P
Sbjct: 140 GGGMGGM-GGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGGAGP 183
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3
Query: 522 PPPXGGGGXXF*XRXPPPPPPP 457
PPP G G PPPPPPP
Sbjct: 765 PPPPGVAGAG---PPPPPPPPP 783
Score = 25.8 bits (54), Expect(2) = 0.99
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 478 PPPPPPPXXXKRXGG 434
PPPPPPP GG
Sbjct: 775 PPPPPPPPPAVSAGG 789
Score = 23.8 bits (49), Expect(2) = 1.6
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 478 PPPPPPP 458
PPPPPPP
Sbjct: 762 PPPPPPP 768
Score = 22.6 bits (46), Expect(2) = 1.6
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = -2
Query: 475 PPPPPPXXXKRXGGG 431
PPPPPP GG
Sbjct: 775 PPPPPPPPPAVSAGG 789
Score = 21.4 bits (43), Expect(2) = 0.99
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 490 LXXXPPPPPP 461
L PPPPPP
Sbjct: 728 LLKSPPPPPP 737
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.4 bits (48), Expect(2) = 1.8
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = -3
Query: 519 PPXGGGGXXF*XRXPPPPP 463
PP G G PPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPP 343
Score = 23.0 bits (47), Expect(2) = 1.8
Identities = 11/36 (30%), Positives = 11/36 (30%)
Frame = -3
Query: 483 RXPPPPPPPXXXKXXXXXGVPFFXPFXXGPPPXXXP 376
R PPPPPP P PP P
Sbjct: 358 RSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/52 (28%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Frame = +3
Query: 780 PPXXGGXXXPP-PXKNXTXPPLPPPXXXXXXPXPXXXXPHXXXKKTXTNPXP 932
PP PP P + PP+PPP P P P P P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -1
Query: 884 GXXGGXGGXXXGGGEGGGXXVFXGGGGGXPPXXG 783
G GG GG GG GGG GG P G
Sbjct: 454 GGFGGRGGFGGRGGFGGGRGRGRGGARSGNPNRG 487
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 478 PPPPPPPXXXKRXGG 434
PPPPPPP GG
Sbjct: 946 PPPPPPPPLVSAAGG 960
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -2
Query: 478 PPPPPPPXXXKRXGGG 431
PPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.153 0.539
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,353,044
Number of Sequences: 5004
Number of extensions: 17320
Number of successful extensions: 206
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -