Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_D16
(987 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.14
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.17
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.3
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.1
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.9 bits (69), Expect = 0.14
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +2
Query: 722 PPXXPPXXAPPXG-XPXXXPPPPP 790
PP PP PP G P PPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Frame = +2
Query: 722 PPXXPPXXAPPXGXPXXXPPPPP---XKREN 805
PP PP PP P PPPPP KR+N
Sbjct: 11 PPPPPPGFEPPSQPP---PPPPPGYVKKRKN 38
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Frame = +2
Query: 698 PTXXPXRXPPXXP-----PXXAPPXGXPXXXPPPPP 790
P P PP P P PP G PPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +2
Query: 722 PPXXPPXXAPPXGXPXXXPPPPP 790
PP PP P PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect(2) = 0.17
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 716 RXPPXXPPXXAPPXGXPXXXPPPPP 790
+ PP PP P P P PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPP 754
Score = 23.8 bits (49), Expect(2) = 0.17
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +2
Query: 887 PXPXTXPPPXPXXGXXXXXKPP 952
P P PPP P G PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPP 767
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 671 AQTQXNXXXPTXXPXRXPPXXPPXXAP-PXGXPXXXPPPPP 790
A Q + P P PP PP P P G P PPP P
Sbjct: 1698 APPQMSAPTPPPPPMSVPP--PPSAPPMPAGPPSAPPPPLP 1736
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 710 PXRXPPXXPPXXAPPXGXPXXXPPPP 787
P PP P APP PPPP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPP 1711
Score = 25.8 bits (54), Expect = 9.4
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = -3
Query: 439 PXXPPXPPPXXPRXLAXPLXXXKPPXXPPXLXTS 338
P PP P P A P+ P PP L S
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 1.8
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 725 PXXPPXXAPPXGXPXXXPPPPP 790
P PP P P PPPPP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPP 242
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 722 PPXXPPXXAPPXGXPXXXPPPPP 790
PP PP APP P PP P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVP 1211
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 722 PPXXPPXXAPPXGXPXXXPPPPP 790
PP PP APP P PP P
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPPVP 1230
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -1
Query: 789 GGGGGXXXGSPXGGAXXGGXXGGXLXGXXVGXXXF 685
GGG G G P G G GG L G G F
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGF 261
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Frame = +2
Query: 698 PTXXPXRXPPXXPPXXAP--PXGXPXXXPPPP 787
P P PP PP P P G P P PP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.141 0.459
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,474,305
Number of Sequences: 5004
Number of extensions: 15270
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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