Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D16
         (987 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   9.8  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    22   9.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +2

Query: 710 PXRXPPXXPPXXAPPXGXPXXXPPPPP 790
           P R  P  P    PP G P   P   P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 810  SXPSLPXXGRPXPPPP 857
            S  ++P  G P PPPP
Sbjct: 1847 SARNIPVSGSPEPPPP 1862


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = +2

Query: 698 PTXXPXRXPPXXPPXXAPPXGXPXXXPPPPPXKRE 802
           PT       P   P    P   P   PP P  +RE
Sbjct: 28  PTRLRREAKPEAEPGNNRPVYIPQPRPPHPRLRRE 62


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = +2

Query: 698 PTXXPXRXPPXXPPXXAPPXGXPXXXPPPPPXKRE 802
           PT       P   P    P   P   PP P  +RE
Sbjct: 29  PTRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.141    0.459 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,833
Number of Sequences: 438
Number of extensions: 2562
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32653530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)