Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D15
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    28   2.0  
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    27   4.5  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    27   4.5  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   4.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   4.5  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   6.0  

>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -2

Query: 247 PGSVNSAPEAPYKEIQSRNNN---IVKTSDWYERCRSNGLAPHAV 122
           P SV +AP+   K+ + +  +   +  T+  Y  CRSNGL PH +
Sbjct: 83  PNSV-AAPKVEEKKSKKKAKDEKPLTYTTGGYLYCRSNGLIPHVM 126


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 542 FFILSTDYDEYAIAYTCKTLKKKTRTHYVFTW 637
           FF+ STD  +Y   Y  +   KK   H+   W
Sbjct: 111 FFVTSTDVFKYLDEYERRVRSKKALGHFPVVW 142


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 532 QNFITALVADNELSLVSSIKRGVDSCQVRLXGSITPVDIHVR 407
           +N++TA       ++++ I+ GV  CQ ++   +TP D   R
Sbjct: 266 ENYVTAY------NMLTGIRVGVSRCQAKMDRELTPADFTAR 301


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 735  CFRCSASXR*XERAVSTFFGVSP 667
            C RCS S    E  VST +GV P
Sbjct: 1575 CSRCSDSLLGEESTVSTMYGVKP 1597


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 735  CFRCSASXR*XERAVSTFFGVSP 667
            C RCS S    E  VST +GV P
Sbjct: 1575 CSRCSDSLLGEESTVSTMYGVKP 1597


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 24/86 (27%), Positives = 34/86 (39%)
 Frame = +3

Query: 6   PXPXXSREPLSLXLDSCVRFATISARAVFIKIVGFIWIITAWGARPFDLQRSYQSLVLTM 185
           P P  SR  L      C    TIS  A +I    F  I  + G     L+ +Y   +LT 
Sbjct: 232 PMPELSRSGLDCIFQLCPNATTISIPANYITSTAFESIPES-GHNVRSLEITYSGSLLTN 290

Query: 186 LLFLLCISLYGASGAEFTLPGECPNM 263
           +  +    L GA      + G+ PN+
Sbjct: 291 ISLIKADDLVGA-----LVDGKLPNL 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,546,425
Number of Sequences: 5004
Number of extensions: 74939
Number of successful extensions: 203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)