Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D15
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical pr...    29   5.7  
AF045635-1|AAU87830.1|  480|Caenorhabditis elegans Nuclear hormo...    28   7.5  

>U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical
           protein F30B5.8 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/76 (22%), Positives = 34/76 (44%)
 Frame = +3

Query: 69  TISARAVFIKIVGFIWIITAWGARPFDLQRSYQSLVLTMLLFLLCISLYGASGAEFTLPG 248
           T+     F++++   + ++ +  R   +     S +L +L+F     ++G     F +P 
Sbjct: 97  TLIFSIAFLRVIAICFPVSYYNNRS-KIPLYGMSTILCLLIFFDQYMMFGYCNNVFDVPL 155

Query: 249 ECPNMKLQENLDYTKF 296
           EC N K   N  Y +F
Sbjct: 156 ECDNAKCAYNQCYFEF 171


>AF045635-1|AAU87830.1|  480|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 76 protein.
          Length = 480

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -2

Query: 241 SVNSAPEAPYKEIQSRNNNIVKTSDWYERCRSNGLAPHAVIIQIKPTILIKTA-RAEMVA 65
           + ++  +A    +    N ++K  DW+E     G+ PH   + +  T+L+ TA R  M  
Sbjct: 397 AADNLSDASRNAVVMARNRVMK--DWFEFYAKQGIDPHEAGLLVGNTLLLLTAVRNAMAV 454

Query: 64  NR 59
           +R
Sbjct: 455 HR 456


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,761,957
Number of Sequences: 27780
Number of extensions: 429456
Number of successful extensions: 968
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)