Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D14
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    27   2.7  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   6.1  

>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +3

Query: 402 IYTNIKAVDGHALQGASSIRYRRTIPIFSPYKVXTKLVYWEXXXLFIEQKFITLNDXFVR 581
           +YT  + V GH L  +S IRY   I I   +    K V +     F  + F  LN     
Sbjct: 158 LYTEKRMVRGHGLTISSQIRYVYYIEILKQFPNYLKAVEFNTGTTFF-KSFKCLNIKKNS 216

Query: 582 AIVLS 596
           +++LS
Sbjct: 217 SLILS 221


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +3

Query: 303 TTQXVDIFLRHMNNARYVRELDFARFHFYDRTGIYTNIKAVDG---HALQGASSIRY 464
           TT+ +++ LR       ++ L      F   T I   +KAV+G   H L   S IRY
Sbjct: 512 TTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAVNGLPIHPLFKKSKIRY 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,660
Number of Sequences: 5004
Number of extensions: 55921
Number of successful extensions: 112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)