Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D14
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0295 - 11830767-11831309,11831820-11831951,11832322-118323...    29   4.9  

>05_03_0295 -
           11830767-11831309,11831820-11831951,11832322-11832375,
           11842285-11843169
          Length = 537

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -1

Query: 245 SNTYCKCNPQKIIYIPRICMLGPQSSLLYNTLYSGNQTFKTIEAVD*IIKRSTQ 84
           +N +   NP+  +  P  C L P     +N+L  GN+  + +E +D +I+   Q
Sbjct: 163 ANWFYVQNPEPAL--PEYCCLPPVYQDTWNSLPMGNEAAQAVELIDRVIRLKEQ 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,520,316
Number of Sequences: 37544
Number of extensions: 343533
Number of successful extensions: 540
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)