Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D14
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067937-4|AAF99911.2|  352|Caenorhabditis elegans Hypothetical ...    29   3.3  
U55854-11|AAT81209.1|  570|Caenorhabditis elegans Map kinase pro...    29   4.4  
U55854-10|AAN60533.1|  426|Caenorhabditis elegans Map kinase pro...    29   4.4  
U55854-9|AAA98016.3|  605|Caenorhabditis elegans Map kinase prot...    29   4.4  

>AF067937-4|AAF99911.2|  352|Caenorhabditis elegans Hypothetical
           protein F22F7.6 protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 219 RIAFTIGI-GRLFQKKCGINDSTTIYGFCTTQXVDIFLRHMNNARYVRELD 368
           R  +T  +   +F    GI  + TIY   T    + +   +  ARYVRE+D
Sbjct: 286 RAGYTFHVPSHVFDVHEGIKHTNTIYSKATIAHQEAYAMDIAGARYVREMD 336


>U55854-11|AAT81209.1|  570|Caenorhabditis elegans Map kinase
           protein 2, isoform c protein.
          Length = 570

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/70 (27%), Positives = 27/70 (38%)
 Frame = +3

Query: 336 MNNARYVRELDFARFHFYDRTGIYTNIKAVDGHALQGASSIRYRRTIPIFSPYKVXTKLV 515
           +N    +R  DF     Y       +   V GH  Q  S+  YR    +FS  +  TK+ 
Sbjct: 155 LNGDCLLRIADFGMARAYASASTVRDDANVGGHMTQYVSTRWYRAPEILFSMVEYDTKVD 214

Query: 516 YWEXXXLFIE 545
            W    +F E
Sbjct: 215 LWSAGCIFAE 224


>U55854-10|AAN60533.1|  426|Caenorhabditis elegans Map kinase
           protein 2, isoform b protein.
          Length = 426

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/70 (27%), Positives = 27/70 (38%)
 Frame = +3

Query: 336 MNNARYVRELDFARFHFYDRTGIYTNIKAVDGHALQGASSIRYRRTIPIFSPYKVXTKLV 515
           +N    +R  DF     Y       +   V GH  Q  S+  YR    +FS  +  TK+ 
Sbjct: 190 LNGDCLLRIADFGMARAYASASTVRDDANVGGHMTQYVSTRWYRAPEILFSMVEYDTKVD 249

Query: 516 YWEXXXLFIE 545
            W    +F E
Sbjct: 250 LWSAGCIFAE 259


>U55854-9|AAA98016.3|  605|Caenorhabditis elegans Map kinase protein
           2, isoform a protein.
          Length = 605

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/70 (27%), Positives = 27/70 (38%)
 Frame = +3

Query: 336 MNNARYVRELDFARFHFYDRTGIYTNIKAVDGHALQGASSIRYRRTIPIFSPYKVXTKLV 515
           +N    +R  DF     Y       +   V GH  Q  S+  YR    +FS  +  TK+ 
Sbjct: 190 LNGDCLLRIADFGMARAYASASTVRDDANVGGHMTQYVSTRWYRAPEILFSMVEYDTKVD 249

Query: 516 YWEXXXLFIE 545
            W    +F E
Sbjct: 250 LWSAGCIFAE 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,601,592
Number of Sequences: 27780
Number of extensions: 315763
Number of successful extensions: 606
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)