Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D13
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    93   7e-20
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    93   7e-20
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    29   1.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.0  
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    26   8.7  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   8.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.7  

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 92.7 bits (220), Expect = 7e-20
 Identities = 41/80 (51%), Positives = 56/80 (70%)
 Frame = +3

Query: 231 WFYVRCAAILRHIYIRSPVGVXTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALK 410
           W+YVR AAI RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSLE + 
Sbjct: 52  WYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIG 111

Query: 411 LVEKVQDGGRILTTQGRRDL 470
           ++EK  +GGR ++ QG+RDL
Sbjct: 112 VLEKSDNGGRRISQQGQRDL 131



 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 22/47 (46%), Positives = 32/47 (68%)
 Frame = +1

Query: 85  VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*P 225
           V+VKDV+  + +   AA LK++GK+  P+ +D+VKT   KELAP  P
Sbjct: 4   VSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDP 50


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 92.7 bits (220), Expect = 7e-20
 Identities = 41/80 (51%), Positives = 56/80 (70%)
 Frame = +3

Query: 231 WFYVRCAAILRHIYIRSPVGVXTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALK 410
           W+YVR AAI RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSLE + 
Sbjct: 52  WYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIG 111

Query: 411 LVEKVQDGGRILTTQGRRDL 470
           ++EK  +GGR ++ QG+RDL
Sbjct: 112 VLEKSDNGGRRISQQGQRDL 131



 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 23/47 (48%), Positives = 32/47 (68%)
 Frame = +1

Query: 85  VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*P 225
           V+VKDV+  K +   AA LK++GK+  P+ +D+VKT   KELAP  P
Sbjct: 4   VSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDP 50


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 61  QHKARCVPVTVKDV-EQDKIVKTVAAHLKKTGKVKVPEHMDLVKTA 195
           QH  R VP+  + + E   I K  AA+   T  +K PE +DL+  A
Sbjct: 795 QHGCRAVPLDGRVLCEPTTISKATAANYIMTHLIKNPEELDLILVA 840


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
 Frame = +2

Query: 767  PIRPXPXKXPQXPPXLXXPXPXKXPGPPXXXXXP-GP 874
            P+RP     PQ       P P   P PP     P GP
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -1

Query: 204 FEASCLYKIHVLRYLDFARFF*VSSDSFNNLVLFNILYCDRNASCLVLTTG 52
           F +S     ++LR+L F+ F   S+ S +N+  F +L        +++T+G
Sbjct: 9   FTSSSSLPCYILRHLPFSNFNRYSTASHDNVNAFRLLMRRFAQPVVIITSG 59


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 84  CHSKGC*TRQDC*NCRCSLKKNGQSQGT*AHGSCKDS 194
           C S+ C ++  C +CRC+  +N   + T   G   D+
Sbjct: 408 CRSRSCPSKYQCYSCRCA--RNSSLEFTSLPGQSSDT 442


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/51 (29%), Positives = 17/51 (33%)
 Frame = +2

Query: 698 PPPXPXMPXXXXXPFXXXXXRXXPIRPXPXKXPQXPPXLXXPXPXKXPGPP 850
           PPP P +      P         PI   P   P  PP +    P   P PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGP-PPPPPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,336
Number of Sequences: 5004
Number of extensions: 40019
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)