Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_D13
(933 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical pr... 98 9e-21
AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal pro... 98 9e-21
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 33 0.29
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.6
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 31 1.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.6
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 31 1.6
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 31 1.6
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 30 2.1
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 30 2.7
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 30 2.7
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 6.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 6.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 6.3
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 6.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 6.3
Z70680-4|CAA94569.1| 274|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 28 8.3
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 28 8.3
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 28 8.3
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 28 8.3
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 28 8.3
AF000197-4|AAB52899.1| 274|Caenorhabditis elegans Hypothetical ... 28 8.3
>Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical
protein T05F1.3 protein.
Length = 146
Score = 97.9 bits (233), Expect = 9e-21
Identities = 48/95 (50%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Frame = +3
Query: 231 WFYVRCAAILRHIYIRSPVGVXTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALK 410
WFY R A++ RH+Y R P G+ K++GG KR GV P+HF S+G+ RKA+Q LE +K
Sbjct: 53 WFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIK 111
Query: 411 LVEKVQDG-GRILTTQGRRDLXQNRCPGSSKGQAA 512
VEK DG GRIL+ QGR+DL + S GQ A
Sbjct: 112 WVEKHPDGKGRILSKQGRKDLDRIATSLRSSGQQA 146
Score = 53.2 bits (122), Expect = 3e-07
Identities = 26/46 (56%), Positives = 33/46 (71%)
Frame = +1
Query: 88 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*P 225
++KDV+Q + K++A LKK+GKVKVPE DLVK KELAP P
Sbjct: 6 SIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDP 51
>AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal
protein S19 protein.
Length = 146
Score = 97.9 bits (233), Expect = 9e-21
Identities = 48/95 (50%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Frame = +3
Query: 231 WFYVRCAAILRHIYIRSPVGVXTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALK 410
WFY R A++ RH+Y R P G+ K++GG KR GV P+HF S+G+ RKA+Q LE +K
Sbjct: 53 WFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIK 111
Query: 411 LVEKVQDG-GRILTTQGRRDLXQNRCPGSSKGQAA 512
VEK DG GRIL+ QGR+DL + S GQ A
Sbjct: 112 WVEKHPDGKGRILSKQGRKDLDRIATSLRSSGQQA 146
Score = 53.2 bits (122), Expect = 3e-07
Identities = 26/46 (56%), Positives = 33/46 (71%)
Frame = +1
Query: 88 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*P 225
++KDV+Q + K++A LKK+GKVKVPE DLVK KELAP P
Sbjct: 6 SIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDP 51
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 33.1 bits (72), Expect = 0.29
Identities = 22/63 (34%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Frame = +2
Query: 695 GPPPXPXMPXXXXXPFXXXXXRXXPIRPXPXKX-PQXPPXLXXPXPXKXPGPPXXXXXPG 871
G P P P P PI P P K PQ PP P PGPP PG
Sbjct: 115 GRPGKPGAPGLPGNPGRPPQQPCEPITPPPWKPCPQGPPG-----PPGPPGPPGDSGEPG 169
Query: 872 PXG 880
G
Sbjct: 170 SPG 172
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/67 (28%), Positives = 19/67 (28%)
Frame = +2
Query: 695 GPPPXPXMPXXXXXPFXXXXXRXXPIRPXPXKXPQXPPXLXXPXPXKXPGPPXXXXXPGP 874
GP P P P P RP P P P PGPP PG
Sbjct: 106 GPAGTPGKPGRPGKP-GAPGLPGNPGRPPQQPCEPITPPPWKPCPQGPPGPPGPPGPPGD 164
Query: 875 XGXXXLP 895
G P
Sbjct: 165 SGEPGSP 171
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/67 (29%), Positives = 21/67 (31%)
Frame = +2
Query: 695 GPPPXPXMPXXXXXPFXXXXXRXXPIRPXPXKXPQXPPXLXXPXPXKXPGPPXXXXXPGP 874
G P P P P P+ P P PP P P PGPP PG
Sbjct: 111 GAPGKPGKPGRPGAPGTPGTPGKPPVAPCEPTTP--PPC--KPCPQGPPGPPGPPGAPGD 166
Query: 875 XGXXXLP 895
G P
Sbjct: 167 PGEAGTP 173
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Frame = +2
Query: 782 PXKXPQXP--PXLXXPXPXKXPGPPXXXXXPGPXGXXXLP 895
P K PQ P P P P PGPP PG G P
Sbjct: 130 PGKPPQSPCEPLTPPPCPACPPGPPGAPGAPGKPGSEGPP 169
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = +2
Query: 698 PPPXPXMPXXXXXPFXXXXXRXXPIRPXPXKXPQXPPXLXXPXPXKXPGPPXXXXXPGP 874
PPP P P P P P PP P P + PGPP P P
Sbjct: 265 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPP----PPPGRTPGPPGMPGMPPP 319
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Frame = +2
Query: 698 PPPXPXMPXXXXXPFXXXXXRXXPIRPXPX--KXPQXP--PXLXXPXPXKXPGPPXXXXX 865
PPP P P P P P P + P P P + P P GPP
Sbjct: 274 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGM 333
Query: 866 PGP 874
P P
Sbjct: 334 PPP 336
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 767 PIRPXPXKXPQXPPXLXXPXPXKXPGPPXXXXXPGPXGXXXLP 895
P+ P P P+ PP P PP PGP G +P
Sbjct: 276 PMPPTPGMTPRPPPP-PSSGMWPPPPPPPPGRTPGPPGMPGMP 317
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/67 (29%), Positives = 21/67 (31%)
Frame = +2
Query: 695 GPPPXPXMPXXXXXPFXXXXXRXXPIRPXPXKXPQXPPXLXXPXPXKXPGPPXXXXXPGP 874
G P P P P P+ P P PP P P PGPP PG
Sbjct: 106 GAPGKPGKPGRPGAPGTPGTPGKPPVAPCEPTTP--PPC--KPCPQGPPGPPGPPGAPGD 161
Query: 875 XGXXXLP 895
G P
Sbjct: 162 PGEAGTP 168
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = +2
Query: 698 PPPXPXMPXXXXXPFXXXXXRXXPIRPXPXKXPQXPPXLXXPXPXKXPGPPXXXXXPGP 874
PPP P P P P P PP P P + PGPP P P
Sbjct: 275 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPP----PPPGRTPGPPGMPGMPPP 329
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Frame = +2
Query: 698 PPPXPXMPXXXXXPFXXXXXRXXPIRPXPX--KXPQXP--PXLXXPXPXKXPGPPXXXXX 865
PPP P P P P P P + P P P + P P GPP
Sbjct: 284 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGM 343
Query: 866 PGP 874
P P
Sbjct: 344 PPP 346
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 767 PIRPXPXKXPQXPPXLXXPXPXKXPGPPXXXXXPGPXGXXXLP 895
P+ P P P+ PP P PP PGP G +P
Sbjct: 286 PMPPTPGMTPRPPPP-PSSGMWPPPPPPPPGRTPGPPGMPGMP 327
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/67 (29%), Positives = 21/67 (31%)
Frame = +2
Query: 695 GPPPXPXMPXXXXXPFXXXXXRXXPIRPXPXKXPQXPPXLXXPXPXKXPGPPXXXXXPGP 874
G P P P P P+ P P PP P P PGPP PG
Sbjct: 106 GAPGKPGKPGRPGAPGTPGTPGKPPVAPCEPTTP--PPC--KPCPQGPPGPPGPPGAPGD 161
Query: 875 XGXXXLP 895
G P
Sbjct: 162 PGEAGTP 168
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -1
Query: 894 GRXXXPXGPGXXXXXGGPGXXXGXGXXSXGGX*GXXXGXGRXG 766
G P GPG GGPG G G G G G G G
Sbjct: 101 GGPGNPGGPGGLGTPGGPGTPGGPGNPGGLGGPGNPGGPGTPG 143
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/59 (28%), Positives = 18/59 (30%)
Frame = +2
Query: 698 PPPXPXMPXXXXXPFXXXXXRXXPIRPXPXKXPQXPPXLXXPXPXKXPGPPXXXXXPGP 874
P P MP P P P P + PP P P P PP P P
Sbjct: 33 PMCQPRMPCAAPMPMPMPMPVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPPPPPMPRP 91
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = +2
Query: 698 PPPXPXMPXXXXXPFXXXXXRXXPIRPXPXKXPQXPPXLXXPXPXKXPGPPXXXXXPGPX 877
PPP P P P P P P PGPP PGP
Sbjct: 146 PPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDATPGLPGPRGPPGPPGEAGQPGPQ 205
Query: 878 GXXXLP 895
G P
Sbjct: 206 GDAGTP 211
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/69 (27%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Frame = +2
Query: 695 GPPPXPXMPXXXXXPFXXXXXRXXPIRPXPXKXPQXP--PXLXXPXPXKXPGPPXXXXXP 868
GPP +P P + P P P P P P PGPP P
Sbjct: 107 GPPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAP 166
Query: 869 GPXGXXXLP 895
G G P
Sbjct: 167 GDPGEAGTP 175
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = +2
Query: 698 PPPXPXMPXXXXXPFXXXXXRXXPIRPXPXKXPQXPPXLXXPXPXKXPGPPXXXXXPGPX 877
PPP P P P P P P PGPP PGP
Sbjct: 146 PPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDATPGLPGPRGPPGPPGEAGQPGPQ 205
Query: 878 GXXXLP 895
G P
Sbjct: 206 GDAGTP 211
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/69 (27%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Frame = +2
Query: 695 GPPPXPXMPXXXXXPFXXXXXRXXPIRPXPXKXPQXP--PXLXXPXPXKXPGPPXXXXXP 868
GPP +P P + P P P P P P PGPP P
Sbjct: 107 GPPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAP 166
Query: 869 GPXGXXXLP 895
G G P
Sbjct: 167 GDPGEAGTP 175
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 776 PXPXKXPQXPPXLXXPXPXKXPGPPXXXXXPGPXGXXXLP 895
P P + PQ PP P P + PGP GP G P
Sbjct: 708 PQPQQPPQGPP--GPPGPQQHPGPYPGYPGYGPPGAMRPP 745
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = +2
Query: 698 PPPXPXMPXXXXXPFXXXXXRXXPIRPXPXKXPQXPPXLXXPXPXKXPGPPXXXXXPGP 874
PPP P P P P K P PP P P P P P P
Sbjct: 434 PPPPPSAPPTIKFPISTGTSYSSTTPPTTPK-PAPPPPSRIPNPSPSPQPAEVSKSPPP 491
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Frame = +2
Query: 767 PIRPXPXKXPQXPPXLXXPXPXKXPG--PPXXXXXPGPXGXXXLP 895
PI P P PP P P PG PP P P LP
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP 752
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Frame = +2
Query: 767 PIRPXPXKXPQXPPXLXXPXPXKXPG--PPXXXXXPGPXGXXXLP 895
PI P P PP P P PG PP P P LP
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP 752
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = +2
Query: 698 PPPXPXMPXXXXXPFXXXXXRXXPIRPXPXKXPQXPPXLXXPXPXKXPGPPXXXXXPGP 874
PPP P P P P K P PP P P P P P P
Sbjct: 441 PPPPPSAPPTIKFPISTGPSYSSTTPPTTPK-PAPPPPSRIPNPSPSPQPAEVSKSPPP 498
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Frame = +2
Query: 767 PIRPXPXKXPQXPPXLXXPXPXKXPG--PPXXXXXPGPXGXXXLP 895
PI P P PP P P PG PP P P LP
Sbjct: 291 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP 335
>Z70680-4|CAA94569.1| 274|Caenorhabditis elegans Hypothetical
protein C25G4.6 protein.
Length = 274
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 79 VPVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTAR 198
+PV+ KDV +D +VK + K T V+ P+ +D + A+
Sbjct: 161 IPVSDKDVARDLLVKNIQEKGKVTFVVERPDSIDAKQWAK 200
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/61 (27%), Positives = 17/61 (27%)
Frame = +2
Query: 698 PPPXPXMPXXXXXPFXXXXXRXXPIRPXPXKXPQXPPXLXXPXPXKXPGPPXXXXXPGPX 877
PPP P P P P P P P P GPP PG
Sbjct: 159 PPPCQPCPAGPPGPPGPDGTPGEPGGPGPAGSPAGPSGPGPAGPPGPAGPPGNDGQPGQP 218
Query: 878 G 880
G
Sbjct: 219 G 219
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +2
Query: 794 PQXPPXLXXPXPXKXPGPPXXXXXPGPXGXXXLP 895
P PP P P PGPP PG G LP
Sbjct: 226 PPGPPG--PPGPQGPPGPPGKDGQPGKAGPPGLP 257
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/67 (28%), Positives = 19/67 (28%)
Frame = +2
Query: 695 GPPPXPXMPXXXXXPFXXXXXRXXPIRPXPXKXPQXPPXLXXPXPXKXPGPPXXXXXPGP 874
GP P P P P RP P P P PGPP PG
Sbjct: 106 GPAGTPGKPGRPGKP-GAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPPGD 164
Query: 875 XGXXXLP 895
G P
Sbjct: 165 SGEPGSP 171
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/63 (33%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Frame = +2
Query: 695 GPP-PXPXMPXXXXXPFXXXXXRXXPIRPXPXKXPQXPPXLXXPXPXKXPGPPXXXXXPG 871
GPP P P P P P P P P P P PGPP PG
Sbjct: 208 GPPSPGPVDPSEDPKP-------SEPPSPGPVDPSDEPSPSDPPGPPGPPGPP-TRRPPG 259
Query: 872 PXG 880
P G
Sbjct: 260 PPG 262
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/67 (28%), Positives = 19/67 (28%)
Frame = +2
Query: 695 GPPPXPXMPXXXXXPFXXXXXRXXPIRPXPXKXPQXPPXLXXPXPXKXPGPPXXXXXPGP 874
GP P P P P RP P P P PGPP PG
Sbjct: 106 GPAGTPGKPGRPGKP-GAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPPGD 164
Query: 875 XGXXXLP 895
G P
Sbjct: 165 SGEPGSP 171
>AF000197-4|AAB52899.1| 274|Caenorhabditis elegans Hypothetical
protein T21G5.4 protein.
Length = 274
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 79 VPVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTAR 198
+PV+ KDV +D +VK + K T V+ P+ +D + A+
Sbjct: 161 IPVSDKDVARDLLVKNIQEKGKVTFVVERPDSIDAKQWAK 200
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,271,699
Number of Sequences: 27780
Number of extensions: 272507
Number of successful extensions: 1622
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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