Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D12
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...   112   6e-26
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...   111   2e-25
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        28   2.0  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   6.2  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    26   8.2  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   8.2  

>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score =  112 bits (270), Expect = 6e-26
 Identities = 48/86 (55%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
 Frame = +3

Query: 114 KRLELLGKYGTRYGASLRKMVKKXEVTQHAKYTCSFCGKDAMKRSCVGIWSC--KRCKRT 287
           K++ + GKYG RYGASLR+ V+K EV QH++Y C FCG++ +KR+  GIW C  K CK+ 
Sbjct: 6   KKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGKGCKKV 65

Query: 288 VAGGAWVFSTTAASSCRSAVRRLREV 365
           +AGGAW  +T AA+S RS +RRLRE+
Sbjct: 66  LAGGAWTVTTAAATSARSTIRRLREM 91


>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score =  111 bits (266), Expect = 2e-25
 Identities = 48/86 (55%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
 Frame = +3

Query: 114 KRLELLGKYGTRYGASLRKMVKKXEVTQHAKYTCSFCGKDAMKRSCVGIWSC--KRCKRT 287
           K++ + GKYG RYGASLR+ V+K EV QH++Y C FCG+  +KR+  GIW C  K C +T
Sbjct: 6   KKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKGCSKT 65

Query: 288 VAGGAWVFSTTAASSCRSAVRRLREV 365
           +AGGAW  +T AA+S RS +RRLRE+
Sbjct: 66  LAGGAWTVTTAAATSARSTIRRLREM 91


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 292 ATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTS 185
           +T +L ++  Q+ T   F+A + +NE  +FA W TS
Sbjct: 69  STSVLRQVGWQLSTS--FVAHVSENENTFFAIWYTS 102


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 195 QHAKYT-CSFCGKDAMKRSCVGIWSCKRCKR 284
           +H K T C  C +  +K  C  +W C+ CK+
Sbjct: 15  RHRKITSCRECHR--LKLKCDRVWPCENCKK 43


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 145 VPYLPSNSNLFGTFGHFGK 89
           + Y+PSN NLF    H+G+
Sbjct: 352 IGYIPSNYNLFAFICHYGQ 370


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 204 KYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 293
           KY C  CG     + C  I S  RC +  A
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMKVYA 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,316
Number of Sequences: 5004
Number of extensions: 36680
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)