Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D12
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   8.6  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   8.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   8.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 171 FYVERHRNVCHICQVIPTFLVRLAIL 94
           F + RH  + H   VIP   + L  L
Sbjct: 246 FSISRHYGILHATYVIPAVTMMLLTL 271


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 28  LCGXSLKTFAFSLVNFCIGXVYQNGQT 108
           L G      A  +VN+ +G  +QNG T
Sbjct: 154 LAGNVAPASADPMVNYTLGHHHQNGAT 180


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 275 SLTRPDADTRTFHSILTTK*ASILCVL 195
           + TRP   T TFH IL  K A+ L VL
Sbjct: 334 TFTRPCGITLTFHEIL--KRANTLFVL 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,624
Number of Sequences: 438
Number of extensions: 3175
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)