Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D10
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   113   2e-26
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    29   1.2  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   6.2  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    26   8.2  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    26   8.2  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  113 bits (273), Expect = 2e-26
 Identities = 54/94 (57%), Positives = 66/94 (70%)
 Frame = +1

Query: 238 SHLXVVSGEVQXLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLG 417
           S + V+   V      K GFH+H+FGDNTNGCTSAG HFNPE + HG  ++AVRHVGDLG
Sbjct: 27  SQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLG 86

Query: 418 NIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLV 519
           N+E+ +  G  K +  DS ISL G NSIIGRT+V
Sbjct: 87  NLES-DAQGNIKTTFSDSVISLFGANSIIGRTIV 119



 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 19/29 (65%), Positives = 21/29 (72%)
 Frame = +3

Query: 537 NDLGLGGHELSKTTGNAGGRIACGVIGLA 623
           +DLG G  E S  TGNAG R ACGVIG+A
Sbjct: 125 DDLGKGTSEESLKTGNAGARNACGVIGIA 153


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/66 (27%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
 Frame = +2

Query: 347  LISTLKNKIMVVPVLLYAMSATSVTLRQLKTLES-LKYQSKILRSLFM-DLTASLVAL*F 520
            L++T  +  + +PVLLY +   ++ +  L++ ES  + + KIL +L M ++T    +L  
Sbjct: 1130 LLNTASHTAVKLPVLLYILDTLNLVITHLQSEESESQLREKILANLVMPNITLIFASLSN 1189

Query: 521  VHADPE 538
            +  +P+
Sbjct: 1190 ILKNPQ 1195


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 664 YQAQHMKNESI*ILAKPMTPQAI 596
           Y     +NES  +LAKPMTP  +
Sbjct: 618 YDPSTSENESASVLAKPMTPPGL 640


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 391 AVRHVGDLGNIEAIEDSGVTKVSIQDSQ 474
           A R   DL NI  +ED  V+  S+ DS+
Sbjct: 231 AKRERDDLKNIMQLEDESVSTTSVHDSE 258


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 353 STLKNKIMVVPVLLYAMSATSVTLRQLKTLESLK 454
           STLK + +  PV L A+    ++LR L   ESL+
Sbjct: 326 STLKRRHVRAPVSLDAVDGIELSLRDLNDEESLQ 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,117,293
Number of Sequences: 5004
Number of extensions: 58988
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)