Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_D10
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 116 3e-26
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 113 2e-25
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 111 7e-25
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 108 7e-24
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 49 6e-06
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 38 0.011
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 29 3.7
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 29 6.5
06_01_0329 + 2383305-2384057,2385423-2385469,2386383-2386815,238... 29 6.5
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810 28 8.6
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 116 bits (278), Expect = 3e-26
Identities = 53/89 (59%), Positives = 61/89 (68%)
Frame = +1
Query: 253 VSGEVQXLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAI 432
V G V L G HGFH+H FGD TNGC S G HFNP + HG PS RHVGDLGNI A
Sbjct: 40 VRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDERHVGDLGNIVAN 99
Query: 433 EDSGVTKVSIQDSQISLHGPNSIIGRTLV 519
+D GV + I+D QISL GP+SI+GR +V
Sbjct: 100 KD-GVADIFIKDLQISLSGPHSILGRAVV 127
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 113 bits (271), Expect = 2e-25
Identities = 50/89 (56%), Positives = 59/89 (66%)
Frame = +1
Query: 253 VSGEVQXLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAI 432
V+G V L G HGFH+H GD TNGC S G H+NP ++HG P RH GDLGN+ A
Sbjct: 148 VTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAG 207
Query: 433 EDSGVTKVSIQDSQISLHGPNSIIGRTLV 519
ED GV + + DSQI L GPNSIIGR +V
Sbjct: 208 ED-GVANIHVVDSQIPLTGPNSIIGRAVV 235
Score = 58.4 bits (135), Expect = 7e-09
Identities = 24/28 (85%), Positives = 27/28 (96%)
Frame = +3
Query: 537 NDLGLGGHELSKTTGNAGGRIACGVIGL 620
+DLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct: 241 DDLGKGGHELSKTTGNAGGRVACGIIGL 268
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 111 bits (267), Expect = 7e-25
Identities = 51/89 (57%), Positives = 57/89 (64%)
Frame = +1
Query: 253 VSGEVQXLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAI 432
V+ V LT G HGFH+HEFGD TNGC S G HFNP HG P VRH GDLGNI A
Sbjct: 80 VNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVA- 138
Query: 433 EDSGVTKVSIQDSQISLHGPNSIIGRTLV 519
GV + +I D QI L GPNS++GR V
Sbjct: 139 NAEGVAEATIVDKQIPLSGPNSVVGRAFV 167
Score = 54.0 bits (124), Expect = 2e-07
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = +3
Query: 537 NDLGLGGHELSKTTGNAGGRIACGVIGLAKI 629
+DLG GGHELS +TGNAGGR+ACGV+GL +
Sbjct: 173 DDLGKGGHELSLSTGNAGGRLACGVVGLTPL 203
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 108 bits (259), Expect = 7e-24
Identities = 51/89 (57%), Positives = 58/89 (65%)
Frame = +1
Query: 253 VSGEVQXLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAI 432
V+G V L G HGFHVH GD TNGC S G HFNP ++HG P RH GDLGNI A
Sbjct: 30 VTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAG 89
Query: 433 EDSGVTKVSIQDSQISLHGPNSIIGRTLV 519
D GV V++ DSQI L G +SIIGR +V
Sbjct: 90 AD-GVANVNVSDSQIPLTGAHSIIGRAVV 117
Score = 58.4 bits (135), Expect = 7e-09
Identities = 24/28 (85%), Positives = 27/28 (96%)
Frame = +3
Query: 537 NDLGLGGHELSKTTGNAGGRIACGVIGL 620
+DLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct: 123 DDLGKGGHELSKTTGNAGGRVACGIIGL 150
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 48.8 bits (111), Expect = 6e-06
Identities = 30/98 (30%), Positives = 49/98 (50%)
Frame = +1
Query: 223 ISRMKSHLXVVSGEVQXLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRH 402
++++ L +V L+ GKHG+ ++EFGD T G S G +NP P
Sbjct: 182 LAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAESTGKVYNPSDYRSNKP------ 235
Query: 403 VGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTL 516
+GDLG +EA E G + S ++ + +IGR++
Sbjct: 236 LGDLGTLEAGE-KGEAQFSASKEKLKV---VDLIGRSI 269
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 37.9 bits (84), Expect = 0.011
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 211 LFSSISRMKSHLXVVSGEVQXLTKGKHGFHVHEFGDNTNGCTSAG 345
+ ++ + S L V V L HGFHVH G TNGC G
Sbjct: 25 MLKAVDVLASSLITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 29.5 bits (63), Expect = 3.7
Identities = 26/90 (28%), Positives = 39/90 (43%)
Frame = -1
Query: 551 ESQVIQGQHGQTKVRPMMLLGP*REI*ESWIDTLVTPESSIASMLPRSPTWRTAELGPP* 372
E Q G+TK +P+ + G S +D S AS + SP+ R+ P
Sbjct: 116 EQSAGQDSRGRTKSKPIRISG------SSTVDNTQRSSRSSASPIRLSPSPRSMSRTRPS 169
Query: 371 SCFSGLK*APADVQPFVLSPNSCTWKPCLP 282
S S + +P PF L P + +W+P P
Sbjct: 170 SAAS--RSSP----PFALQPPTPSWRPSTP 193
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 208 ELFSSISRMKSHLX-VVSGEVQXLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGP 384
E+ + R++ L ++S V+ +GK G ++H GC G + + H P
Sbjct: 473 EVTGDVLRIRQILTNLISNAVKFTHEGKVGINLHVLDKQLPGCRIEGGQLH--SKAHSAP 530
Query: 385 SSAVRH 402
++A H
Sbjct: 531 AAAAEH 536
>06_01_0329 +
2383305-2384057,2385423-2385469,2386383-2386815,
2386852-2387034,2388388-2389044
Length = 690
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 401 MSATSVTLRQLKTLESLKYQSKILRSLFMDLTASLVAL*FVHADPE*LGTRWP 559
+ +S TL ++K L ++ L S+ M ++A+ VH D +G WP
Sbjct: 242 LQLSSPTLPEIKKLVMFVFRYVSLASIRMSTLVRVLAVSHVHPDEAAVGAAWP 294
>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
Length = 472
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +1
Query: 316 DNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPN 495
D TS GAH +P + H PSS + + + S T VS++ ++ PN
Sbjct: 15 DIVKAATSPGAHSSPLRPAHSSPSSTLSEASNTSS------SSATSVSLKRARAPRKRPN 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,289,497
Number of Sequences: 37544
Number of extensions: 391855
Number of successful extensions: 890
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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