Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D10
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X77020-1|CAA54318.1|  158|Caenorhabditis elegans copper/zinc sup...   128   5e-30
L20135-1|AAA28147.1|  158|Caenorhabditis elegans superoxide dism...   128   5e-30
AC006608-8|AAV34795.1|  158|Caenorhabditis elegans Sod (superoxi...   128   5e-30
AC006608-7|AAF39759.1|  180|Caenorhabditis elegans Sod (superoxi...   128   5e-30
U42833-3|AAA83577.1|  178|Caenorhabditis elegans Sod (superoxide...   120   1e-27
Z27080-4|CAB61015.1|  176|Caenorhabditis elegans Hypothetical pr...   109   3e-24
AB190513-1|BAD51397.1|  221|Caenorhabditis elegans superoxide di...   109   3e-24
AB003924-1|BAA28262.1|  176|Caenorhabditis elegans SOD4-1 protein.    109   3e-24
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    42   8e-04
Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical pr...    42   8e-04
U41556-7|AAP68954.1|  145|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U41556-5|AAK39193.1|  212|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U41556-6|AAP68953.1|  248|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z75549-2|CAA99916.1|  313|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>X77020-1|CAA54318.1|  158|Caenorhabditis elegans copper/zinc
           superoxide dismutase protein.
          Length = 158

 Score =  128 bits (309), Expect = 5e-30
 Identities = 52/90 (57%), Positives = 72/90 (80%)
 Frame = +1

Query: 250 VVSGEVQXLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEA 429
           V+ GE++ LT G HGFHVH++GD+TNGC SAG HFNP  + HGGP S +RHVGDLGN+EA
Sbjct: 30  VIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEA 89

Query: 430 IEDSGVTKVSIQDSQISLHGPNSIIGRTLV 519
             D GV K+ + D+ ++L+GPN+++GR++V
Sbjct: 90  GAD-GVAKIKLTDTLVTLYGPNTVVGRSMV 118



 Score = 35.1 bits (77), Expect = 0.067
 Identities = 20/32 (62%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = +3

Query: 537 NDLGLG---GHELSKTTGNAGGRIACGVIGLA 623
           +DLG G     E SK TGNAG R ACGVI LA
Sbjct: 124 DDLGEGVGDKAEESKKTGNAGARAACGVIALA 155


>L20135-1|AAA28147.1|  158|Caenorhabditis elegans superoxide
           dismutase protein.
          Length = 158

 Score =  128 bits (309), Expect = 5e-30
 Identities = 52/90 (57%), Positives = 72/90 (80%)
 Frame = +1

Query: 250 VVSGEVQXLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEA 429
           V+ GE++ LT G HGFHVH++GD+TNGC SAG HFNP  + HGGP S +RHVGDLGN+EA
Sbjct: 30  VIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEA 89

Query: 430 IEDSGVTKVSIQDSQISLHGPNSIIGRTLV 519
             D GV K+ + D+ ++L+GPN+++GR++V
Sbjct: 90  GAD-GVAKIKLTDTLVTLYGPNTVVGRSMV 118



 Score = 35.1 bits (77), Expect = 0.067
 Identities = 20/32 (62%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = +3

Query: 537 NDLGLG---GHELSKTTGNAGGRIACGVIGLA 623
           +DLG G     E SK TGNAG R ACGVI LA
Sbjct: 124 DDLGEGVGDKAEESKKTGNAGARAACGVIALA 155


>AC006608-8|AAV34795.1|  158|Caenorhabditis elegans Sod (superoxide
           dismutase) protein1, isoform b protein.
          Length = 158

 Score =  128 bits (309), Expect = 5e-30
 Identities = 52/90 (57%), Positives = 72/90 (80%)
 Frame = +1

Query: 250 VVSGEVQXLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEA 429
           V+ GE++ LT G HGFHVH++GD+TNGC SAG HFNP  + HGGP S +RHVGDLGN+EA
Sbjct: 30  VIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEA 89

Query: 430 IEDSGVTKVSIQDSQISLHGPNSIIGRTLV 519
             D GV K+ + D+ ++L+GPN+++GR++V
Sbjct: 90  GAD-GVAKIKLTDTLVTLYGPNTVVGRSMV 118



 Score = 35.1 bits (77), Expect = 0.067
 Identities = 20/32 (62%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = +3

Query: 537 NDLGLG---GHELSKTTGNAGGRIACGVIGLA 623
           +DLG G     E SK TGNAG R ACGVI LA
Sbjct: 124 DDLGEGVGDKAEESKKTGNAGARAACGVIALA 155


>AC006608-7|AAF39759.1|  180|Caenorhabditis elegans Sod (superoxide
           dismutase) protein1, isoform a protein.
          Length = 180

 Score =  128 bits (309), Expect = 5e-30
 Identities = 52/90 (57%), Positives = 72/90 (80%)
 Frame = +1

Query: 250 VVSGEVQXLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEA 429
           V+ GE++ LT G HGFHVH++GD+TNGC SAG HFNP  + HGGP S +RHVGDLGN+EA
Sbjct: 52  VIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEA 111

Query: 430 IEDSGVTKVSIQDSQISLHGPNSIIGRTLV 519
             D GV K+ + D+ ++L+GPN+++GR++V
Sbjct: 112 GAD-GVAKIKLTDTLVTLYGPNTVVGRSMV 140



 Score = 35.1 bits (77), Expect = 0.067
 Identities = 20/32 (62%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = +3

Query: 537 NDLGLG---GHELSKTTGNAGGRIACGVIGLA 623
           +DLG G     E SK TGNAG R ACGVI LA
Sbjct: 146 DDLGEGVGDKAEESKKTGNAGARAACGVIALA 177


>U42833-3|AAA83577.1|  178|Caenorhabditis elegans Sod (superoxide
           dismutase) protein5 protein.
          Length = 178

 Score =  120 bits (289), Expect = 1e-27
 Identities = 51/87 (58%), Positives = 67/87 (77%)
 Frame = +1

Query: 259 GEVQXLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIED 438
           GE++ L+ G HGFH+H++GD+T+GCTSAG HFNP K +HGG  S VRHVGDLGN+EA  D
Sbjct: 53  GEIKGLSPGLHGFHIHQYGDSTDGCTSAGPHFNPCKMNHGGRDSVVRHVGDLGNVEAGAD 112

Query: 439 SGVTKVSIQDSQISLHGPNSIIGRTLV 519
            GV K+   D  +SL G N++IGR++V
Sbjct: 113 -GVAKIKFSDKVVSLFGANTVIGRSMV 138



 Score = 32.7 bits (71), Expect = 0.36
 Identities = 19/32 (59%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +3

Query: 537 NDLGLG---GHELSKTTGNAGGRIACGVIGLA 623
           +DLG G     E S  TGNAG R ACGVI LA
Sbjct: 144 DDLGQGIDDKAEESLKTGNAGARAACGVIALA 175


>Z27080-4|CAB61015.1|  176|Caenorhabditis elegans Hypothetical
           protein F55H2.1 protein.
          Length = 176

 Score =  109 bits (262), Expect = 3e-24
 Identities = 50/89 (56%), Positives = 61/89 (68%)
 Frame = +1

Query: 253 VSGEVQXLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAI 432
           ++G V  L  GKHGFH+HE GD  NGC SAG H+NP K  HG P  + RH+GDLGNIE+ 
Sbjct: 55  LNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIES- 113

Query: 433 EDSGVTKVSIQDSQISLHGPNSIIGRTLV 519
             SG T +S+ DS  SL G  SIIGR++V
Sbjct: 114 PASGDTLISVSDSLASLSGQYSIIGRSVV 142



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 18/27 (66%), Positives = 21/27 (77%)
 Frame = +3

Query: 537 NDLGLGGHELSKTTGNAGGRIACGVIG 617
           +DLG G  + SKTTGNAG R+ACG IG
Sbjct: 148 DDLGRGTSDQSKTTGNAGSRLACGTIG 174


>AB190513-1|BAD51397.1|  221|Caenorhabditis elegans superoxide
           dismutase protein.
          Length = 221

 Score =  109 bits (262), Expect = 3e-24
 Identities = 50/89 (56%), Positives = 61/89 (68%)
 Frame = +1

Query: 253 VSGEVQXLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAI 432
           ++G V  L  GKHGFH+HE GD  NGC SAG H+NP K  HG P  + RH+GDLGNIE+ 
Sbjct: 55  LNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIES- 113

Query: 433 EDSGVTKVSIQDSQISLHGPNSIIGRTLV 519
             SG T +S+ DS  SL G  SIIGR++V
Sbjct: 114 PASGDTLISVSDSLASLSGQYSIIGRSVV 142



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/34 (58%), Positives = 25/34 (73%)
 Frame = +3

Query: 537 NDLGLGGHELSKTTGNAGGRIACGVIGLAKI*IL 638
           +DLG G  + SKTTGNAG R+ACG IG+ +  IL
Sbjct: 148 DDLGRGTSDQSKTTGNAGSRLACGTIGIVEERIL 181


>AB003924-1|BAA28262.1|  176|Caenorhabditis elegans SOD4-1 protein.
          Length = 176

 Score =  109 bits (262), Expect = 3e-24
 Identities = 50/89 (56%), Positives = 61/89 (68%)
 Frame = +1

Query: 253 VSGEVQXLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAI 432
           ++G V  L  GKHGFH+HE GD  NGC SAG H+NP K  HG P  + RH+GDLGNIE+ 
Sbjct: 55  LNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIES- 113

Query: 433 EDSGVTKVSIQDSQISLHGPNSIIGRTLV 519
             SG T +S+ DS  SL G  SIIGR++V
Sbjct: 114 PASGDTLISVSDSLASLSGQYSIIGRSVV 142



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 18/27 (66%), Positives = 21/27 (77%)
 Frame = +3

Query: 537 NDLGLGGHELSKTTGNAGGRIACGVIG 617
           +DLG G  + SKTTGNAG R+ACG IG
Sbjct: 148 DDLGRGTSDQSKTTGNAGSRLACGTIG 174


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
            T01D3.3b protein.
          Length = 1011

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = +1

Query: 220  SISRMKSHLXVVSGEVQXLTKGKHGFHVHEFGDNTNGCTSAGAHFN 357
            + S++ S    + GEV  L  G+H   +H+FGD++ GC+  GA F+
Sbjct: 900  TFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAPFS 945


>Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical
           protein T01D3.3a protein.
          Length = 802

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = +1

Query: 220 SISRMKSHLXVVSGEVQXLTKGKHGFHVHEFGDNTNGCTSAGAHFN 357
           + S++ S    + GEV  L  G+H   +H+FGD++ GC+  GA F+
Sbjct: 691 TFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAPFS 736


>U41556-7|AAP68954.1|  145|Caenorhabditis elegans Hypothetical
           protein C25B8.4c protein.
          Length = 145

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 559 MS*VRPLVMLVAVLLVESLAWLRFKYFHFSYVGLGTTIFSD 681
           MS +  LV+LVA +   S  + + K F++SY   GT  F+D
Sbjct: 1   MSRIFKLVLLVAAVGFVSTRFAQVKLFNWSYKDFGTNAFTD 41


>U41556-5|AAK39193.1|  212|Caenorhabditis elegans Hypothetical
           protein C25B8.4a protein.
          Length = 212

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 559 MS*VRPLVMLVAVLLVESLAWLRFKYFHFSYVGLGTTIFSD 681
           MS +  LV+LVA +   S  + + K F++SY   GT  F+D
Sbjct: 1   MSRIFKLVLLVAAVGFVSTRFAQVKLFNWSYKDFGTNAFTD 41


>U41556-6|AAP68953.1|  248|Caenorhabditis elegans Hypothetical
           protein C25B8.4b protein.
          Length = 248

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 577 LVMLVAVLLVESLAWLRFKYFHFSYVGLGTTIFSD 681
           LV+LVA +   S  + + K F++SY   GT  F+D
Sbjct: 43  LVLLVAAVGFVSTRFAQVKLFNWSYKDFGTNAFTD 77


>Z75549-2|CAA99916.1|  313|Caenorhabditis elegans Hypothetical
           protein T19C4.2 protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 387 TGTTMILFFRVEMSSS*CATICVVTKFVHMETVFTLSQXLDLSRNNXQVTF 235
           T TT I F+ +++SS  C T  + + ++ +E  FTL+    L  N   V +
Sbjct: 48  TLTTGITFYTLKLSSVTCQTCALSSIYLMLENNFTLNIMYSLMYNMSYVQY 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,207,905
Number of Sequences: 27780
Number of extensions: 331606
Number of successful extensions: 732
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)