Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D09
         (972 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    25   1.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   1.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   4.7  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/44 (31%), Positives = 15/44 (34%)
 Frame = +3

Query: 669 PXXXPPPPPXXXSPXXXARPPXPXXGGPPPPXPXXXTPPXVPPP 800
           P   PPPPP          P  P  G PP   P       + PP
Sbjct: 159 PLHYPPPPPVYTHHYARYHP-YPNFGVPPAGIPLQNPGLNLNPP 201


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 969 PXGGDATHPAGGXXXPGGGVXRGXP 895
           P GG A  P  G   P  G+ +G P
Sbjct: 37  PQGGGAVQPDPGSCDPSVGLRQGIP 61


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +2

Query: 779 PXXXSPPRGXXXXXXPPXPXPPP 847
           P    PP G      PP P  PP
Sbjct: 160 PGPALPPTGFLCNNYPPLPQVPP 182


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,936
Number of Sequences: 336
Number of extensions: 3724
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27513178
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)