Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D08
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    28   2.0  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    28   2.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   6.0  
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    26   7.9  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    26   7.9  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 555  YYVPLVEIVPAPWTKPEVAKKTREXMEEIGQQPVSLTREIDGFVLN 692
            Y   ++++VP P  +PE   K +    E  +  V++  E+DG++L+
Sbjct: 1139 YLFEIIDVVPQPG-RPETRHKLKLVTREEIKGTVAVVCEVDGYLLS 1183


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +1

Query: 307 LANNFNV*KGLRIWQPQLKEQYLFRNVFQRILTLKKRCSRISTA*LTITRYYQVQQVLLC 486
           L + FN   G  + Q    +  LF+ + +++LTL+ +C  +    L    Y Q Q++   
Sbjct: 197 LTSVFNKSAGFCLVQEYCPQGDLFKQIEEKVLTLEDKCCYLKQI-LQAVAYLQSQRIA-- 253

Query: 487 HHYSLKD*NI 516
            H  LK  NI
Sbjct: 254 -HRDLKPENI 262


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 621  WFS*QLQA*SRVLGQFQQGVRNKVDSPDEKQ 529
            W+S +  A S VL QF++  R  + S  EK+
Sbjct: 1553 WYSVESNATSHVLQQFEEACRKALSSSAEKR 1583


>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 164 MGAVVCLSWLSGYC 205
           MG+VVC  WL G C
Sbjct: 49  MGSVVCKHWLRGLC 62


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 327 IKGSTDLATAVKGAVFVQECVPENLDLK 410
           + G+  LAT  +GA+ VQ   P NL++K
Sbjct: 165 VSGTRVLATMAQGAIAVQRAAP-NLEIK 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,216,724
Number of Sequences: 5004
Number of extensions: 62819
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)