Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_D08
(863 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 67 2e-11
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 54 1e-07
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 47 2e-05
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 45 9e-05
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 42 8e-04
05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468 29 4.8
04_03_0515 + 16698589-16701066 29 4.8
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581... 29 6.3
03_01_0110 - 865605-866004,866094-866712,867659-867863 29 6.3
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 66.9 bits (156), Expect = 2e-11
Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 3/191 (1%)
Frame = +3
Query: 168 ALLFASVGYQVTVYXVVAKQITDAIEDIKYQLHTLENDGLL-RGELKAS-EQFQCIKGST 341
A L A+ G V + ++ A++ I L L G L + + S EQ +C+
Sbjct: 26 AQLAAAAGCGVLLLDSDTAALSRAVDSISSSLRRLVAKGQLSQASCEHSIEQIKCVSSVQ 85
Query: 342 DLATAVKGAVFVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXXXXXXXXXXEGLKHKS 521
+L + A V E + E+ D+KKK+F LD + + I
Sbjct: 86 EL----RDADLVIEAIVESEDIKKKLFVELDKITKPSAILASNTSSISITRLASATNRPC 141
Query: 522 QVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREXMEEIGQQPVSLTREIDGFVLNRIQ 701
QVI H NPP + L+EI+ T EV K + E +G + V +++ GF++NRI
Sbjct: 142 QVIGMHFFNPPPIMKLIEIIRGADTSEEVFTKVKSFSERLG-KTVICSQDYPGFIVNRIL 200
Query: 702 YAILDEV-WRL 731
+++E W L
Sbjct: 201 MPMINEAFWAL 211
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 54.0 bits (124), Expect = 1e-07
Identities = 40/169 (23%), Positives = 74/169 (43%)
Frame = +3
Query: 192 YQVTVYXVVAKQITDAIEDIKYQLHTLENDGLLRGELKASEQFQCIKGSTDLATAVKGAV 371
Y V + V K + I+ IK L + G + E + + + G D K
Sbjct: 338 YPVILKEVNEKFLNAGIDRIKANLQSRVRKGKMTEE-RYEKAMSLVTGVLDYER-FKDVD 395
Query: 372 FVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXXXXXXXXXXEGLKHKSQVIVSHPVNP 551
V E V EN+ LK+++F +L+ + + E + K +++ +H +P
Sbjct: 396 LVIEAVIENVKLKQQIFSDLEKYCPSHCVLATNTSTIDLNLIGEKTRSKDRIVGAHFFSP 455
Query: 552 PYYVPLVEIVPAPWTKPEVAKKTREXMEEIGQQPVSLTREIDGFVLNRI 698
+ +PL+EIV T P+V + ++I + P+ + GF +NR+
Sbjct: 456 AHVMPLLEIVRTQHTSPQVVVDLLDVGKKIKKTPI-VVGNCTGFAVNRM 503
>02_02_0418 +
10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 46.8 bits (106), Expect = 2e-05
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%)
Frame = +3
Query: 213 VVAKQITDAIEDIKYQLHTLENDGLL-RGEL---KASEQFQCIKGSTDLATAVKGAVFVQ 380
VV K++ ++ +GL+ RG L K ++ +KG+ D + K V
Sbjct: 335 VVLKEVNPQFLQRGQKMIAANLEGLVKRGSLTKDKMNKAMSLLKGALDYSD-FKDVDMVI 393
Query: 381 ECVPENLDLKKKVFQNLDSVVDDNTIXXXXXXXXXXXXXXEGLKHKSQVIVSHPVNPPYY 560
E V E + LK+ +F +L+ V + I E + ++I +H +P +
Sbjct: 394 EAVIEKIPLKQSIFSDLEKVCPPHCILATNTSTIDLNVVGEKTNSQDRIIGAHFFSPAHI 453
Query: 561 VPLVEIVPAPWTKPEVAKKTREXMEEIGQQPVSLTREIDGFVLNR 695
+PL+EIV T P+ + I + PV + GF +NR
Sbjct: 454 MPLLEIVRTEKTSPQAILDLITVGKMIKKVPV-VVGNCTGFAVNR 497
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 44.8 bits (101), Expect = 9e-05
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 1/162 (0%)
Frame = +3
Query: 216 VAKQITDA-IEDIKYQLHTLENDGLLRGELKASEQFQCIKGSTDLATAVKGAVFVQECVP 392
V +Q DA I +K L +L G + E + + G D + V + E V
Sbjct: 342 VNEQFLDAGISRVKANLQSLVKRGQMTKE-DYENKLSLLSGVLDYEQFREADVVI-EAVI 399
Query: 393 ENLDLKKKVFQNLDSVVDDNTIXXXXXXXXXXXXXXEGLKHKSQVIVSHPVNPPYYVPLV 572
E+L LK+K+F +L+ N I + + ++ +H +P + +PL+
Sbjct: 400 EDLSLKQKIFADLEKYCHSNCILATNTSTIDLHLIGQKTSCQDRIAGAHFFSPAHAMPLL 459
Query: 573 EIVPAPWTKPEVAKKTREXMEEIGQQPVSLTREIDGFVLNRI 698
EI+ T +V ++I + P+ + GF +NR+
Sbjct: 460 EIIRTHRTSSQVVIDLLNVAKQIRKTPI-VVGNCTGFAVNRM 500
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 41.5 bits (93), Expect = 8e-04
Identities = 25/104 (24%), Positives = 50/104 (48%)
Frame = +3
Query: 387 VPENLDLKKKVFQNLDSVVDDNTIXXXXXXXXXXXXXXEGLKHKSQVIVSHPVNPPYYVP 566
V EN+ +K++VF +L+ + + E + ++ +H +P + +P
Sbjct: 416 VVENVKVKQQVFADLERYCPSHCVLATNTSTIDLDLIGEKTNSQDRIAGAHFFSPAHVMP 475
Query: 567 LVEIVPAPWTKPEVAKKTREXMEEIGQQPVSLTREIDGFVLNRI 698
L+EIV + T P+V + ++I + PV + GF +NR+
Sbjct: 476 LLEIVRSNHTSPQVVVDLLDVGKKIKKTPV-VVGNCTGFAVNRM 518
>05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468
Length = 898
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 501 EGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREXMEEIGQ 647
E L H V+ + PV+ +VE+ P TK +A+K M+E GQ
Sbjct: 745 EMLDHLESVLANEPVSVKSGQFIVEVKPQGVTKGLIAEKVLTSMKEKGQ 793
>04_03_0515 + 16698589-16701066
Length = 825
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 477 YLLNLIISCYRQLRCRDSGTPFF 409
Y N++I+CYR+ R D G P F
Sbjct: 190 YTYNILINCYRRARRPDLGLPVF 212
>06_03_0650 +
23157130-23157582,23157687-23157898,23157982-23158128,
23158214-23158347,23158442-23158551,23158711-23158817,
23159045-23159183,23159286-23159402,23159737-23159844,
23159927-23159998,23160108-23160230,23160336-23160495,
23160585-23160706,23160825-23160962,23161042-23161184,
23161305-23161367,23161567-23161630,23161709-23161844,
23162123-23162196,23162764-23162858,23162951-23162982,
23163104-23163276
Length = 973
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 576 IVPAPWTKPEVAKKTREXMEEIGQQPVSLTREIDGFVLN 692
++PAPW K K +E + ++GQ + + I+G +N
Sbjct: 504 VLPAPWLKYHDTGKEKECLPQVGQWNMVNKKVINGCKVN 542
>03_01_0110 - 865605-866004,866094-866712,867659-867863
Length = 407
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +3
Query: 540 PVNPPYYVPL---VEIVPAPWTKPE 605
PV PP Y+ L ++VP PW +PE
Sbjct: 317 PVKPPTYLRLNSKAQLVPNPWRQPE 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,627,186
Number of Sequences: 37544
Number of extensions: 393965
Number of successful extensions: 1006
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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