Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D07
         (969 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.15 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.3  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   9.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 0.15
 Identities = 12/41 (29%), Positives = 14/41 (34%)
 Frame = +2

Query: 830 PXPPXXXXXTPPXPPXPXSPXXXHPPPPXXXPXPPPPHXPT 952
           P P      +P  P     P     PPP   P  PP   P+
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPS 61


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 908 PPXXXPXPPPP 940
           PP   P PPPP
Sbjct: 338 PPKPAPPPPPP 348


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -1

Query: 909  GGGXXXXGEXGXGGXGGVXXXXXGG 835
            GGG    G  G GG GG       G
Sbjct: 1705 GGGGSLAGLGGLGGLGGAAEASAAG 1729


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -1

Query: 909  GGGXXXXGEXGXGGXGGVXXXXXGG 835
            GGG    G  G GG GG       G
Sbjct: 1701 GGGGSLAGLGGLGGLGGAAEASAAG 1725


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 9/46 (19%), Positives = 21/46 (45%)
 Frame = +3

Query: 252 IALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNXPXRGER 389
           +  + +I+    QVN   C ++     GE++ +++     P  G +
Sbjct: 24  LIFYGSIMFSMTQVNKEECDYYQNLNLGEIYYIYNPRYPLPYSGSK 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,457
Number of Sequences: 438
Number of extensions: 6722
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31927896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)