Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D06
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    27   2.7  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    26   6.1  

>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 535 IESLAEVHSGI*QLLISGQGALAVVLPAVPGIEAVTFVNFLSAFRCLSDVVSQEVGAL 362
           + S A   SG+ Q+L + Q  L+++LP +     V F       R +SD  ++E G L
Sbjct: 424 VVSAAVGQSGLNQVLNASQVCLSILLPFLT-FPLVMFTCSRKVMRVVSDSTNEETGQL 480


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 156 LVNVLASEPTQRTTK-AKIINFCISIVXFEL 67
           L N L++   +  TK AK++NFCI I  F +
Sbjct: 63  LFNSLSARTFRNLTKCAKVVNFCILISLFNV 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,062,338
Number of Sequences: 5004
Number of extensions: 37308
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)