Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D04
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1082 - 8847795-8848033,8848511-8848724                           31   1.2  
03_02_0513 + 9035204-9035422,9035552-9036091,9036512-9036742,903...    29   3.8  
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085...    29   5.0  
02_02_0419 - 10009686-10012568                                         28   8.7  

>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +2

Query: 659 RVVYGGNSADSTR--EQWFFQPAKYENDVLFFIYNRQFNDALELGTNRERLGETARPLDT 832
           +  Y G++A   R  + W      Y  DVL F YN++++D   +G    R  +  R  DT
Sbjct: 42  KTYYVGDAAGWGRNLDWWLAGKTFYAGDVLVFKYNKEYHDVAVVGGKGYRRCKVPRNKDT 101

Query: 833 MXXXXGLPDI 862
                G   +
Sbjct: 102 AVLRTGYDQV 111


>03_02_0513 +
           9035204-9035422,9035552-9036091,9036512-9036742,
           9036829-9036969,9037344-9037541,9037644-9037937
          Length = 540

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 29/100 (29%), Positives = 47/100 (47%)
 Frame = +3

Query: 156 ELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTME 335
           E++ DTS +  EE L+  ++  D D A    L+  S  +  +I+      + D R  T+ 
Sbjct: 444 EITPDTSTETAEEMLHRWLMKEDVDRA----LDGLSPRERQVIRYRFG--MDDGRLRTLH 497

Query: 336 YCYKLWVGNGQEIVRKYFPLNFRTHHGRKLCQDHLQKLQP 455
              +L +G  +E +R+   + FR   GRK  Q     LQP
Sbjct: 498 DIGRL-MGVSRERIRQIELVAFRKLRGRKKVQSLQHYLQP 536


>04_04_1263 -
           32207636-32207938,32208020-32208170,32208263-32208500,
           32208604-32208814,32208927-32209108,32209196-32209297,
           32210002-32211187,32212103-32212499,32212551-32212582,
           32212885-32213157,32213307-32213394,32213486-32213723,
           32213824-32214034,32214119-32214300,32214378-32214479,
           32214801-32216224,32216751-32216822,32217688-32217719,
           32218186-32218263,32218425-32218512,32218608-32218845,
           32219060-32219162,32219386-32219558,32219644-32219745,
           32219825-32220606,32220659-32221012,32224055-32224140,
           32224250-32224400,32224534-32224771,32224876-32225119,
           32225190-32225368,32225577-32225675,32225835-32227083
          Length = 3195

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
 Frame = +3

Query: 246 SLEYESQGKGSIIQNVVNNLIIDKRRNTME------YCYKLWV-GNGQEIVRKYFPLNFR 404
           S++ ++   G ++  +V+ L I   + T        Y ++LW  GN  E++ K+F  ++ 
Sbjct: 684 SVKSDTYSFGVLLLEIVSGLKISSSKLTPNFFSLTAYAWRLWKDGNATELLDKFFVDSYP 743

Query: 405 THHGRKLCQ--DHLQKLQP 455
            H     CQ  D L   +P
Sbjct: 744 LHEAFSFCQSDDRLTPAKP 762


>02_02_0419 - 10009686-10012568
          Length = 960

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = +1

Query: 52  VGFADLKAXLKGS*QNETSRCILRCACSPPARASLNYPRTLLTKTSRRNCTTASS 216
           VG+A + + L        S C L  A SPPARA+L   + L   T+  N ++A+S
Sbjct: 210 VGWAGVVSNLPSLRVLALSDCGLTAAPSPPARANLTRLQKLDLSTNVINTSSANS 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,625,482
Number of Sequences: 37544
Number of extensions: 430439
Number of successful extensions: 1126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)