Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D03
         (1124 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.096
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.90 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.096
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -2

Query: 298 PPXXXWGGPPPPXXXXXXGXXXPPPXGXPXP 206
           PP    GGPPPP          PPP   P P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = -1

Query: 308 PXXXPPXXXGXXPPPXXXXXXGXPXPPPXGXTPPPXPRV 192
           P   P    G  PPP          PPP    PPP P V
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPP---PPPPPPAV 785


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.90
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 742 PXRPNCXLSPLLAAHGXPARPPXSXQXPXPPASXXP 849
           P  P+  ++P L A G PA PP     P PP +  P
Sbjct: 448 PLPPSAPIAPPLPA-GMPAAPPLPPAAPAPPPAPAP 482



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 21/76 (27%), Positives = 23/76 (30%)
 Frame = -1

Query: 425 PPPXGPGXRKXXXXAGXVGLXRRXGFPXKPKXAXEXPEXPXXXPPXXXGXXPPPXXXXXX 246
           PPP  PG  +       +G   R   P  P      P  P   PP      PP       
Sbjct: 391 PPPAIPG--RSAPALPPLGNASRTSTPPVPTP----PSLPPSAPPSLPPSAPPSLPMGAP 444

Query: 245 GXPXPPPXGXTPPPXP 198
             P  PP     PP P
Sbjct: 445 AAPPLPPSAPIAPPLP 460



 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -1

Query: 272 PPPXXXXXXGXPXPPPXGXTPPPXP 198
           PPP        P PP     PPP P
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPP 365


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/52 (30%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
 Frame = -3

Query: 351  VPXKAXGXXXVPXXTXXXPPXXXGXXPPPXXXXXXXXPXXPPP-XGXPXPXP 199
            VP  + G   VP      PP       PP        P  PPP    P P P
Sbjct: 1171 VPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222



 Score = 26.6 bits (56), Expect = 6.3
 Identities = 15/50 (30%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
 Frame = -1

Query: 338  PKXAXEXPEXPXXXPPXXX-GXXPPPXXXXXXGXPXPPPXGXTPPPXPRV 192
            P  A   P+     PP       PP         P P P G  P P P V
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSV 1166



 Score = 26.2 bits (55), Expect = 8.3
 Identities = 15/51 (29%), Positives = 17/51 (33%)
 Frame = -3

Query: 351  VPXKAXGXXXVPXXTXXXPPXXXGXXPPPXXXXXXXXPXXPPPXGXPXPXP 199
            VP  +     VP  +   PP       PP        P  P P G P P P
Sbjct: 1094 VPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAP-PVP 1143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,409,733
Number of Sequences: 5004
Number of extensions: 14056
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 597654600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)