Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_D02
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical p...    31   1.1  
U42830-3|AAC48275.1|  195|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z81573-3|CAB04624.3|  398|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical
           protein C25E10.10 protein.
          Length = 169

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +1

Query: 178 KGXXSVLYCPQMAEPDCXX--PEVHDFVDHVGPCDVPQCFCDRPNVRNTKTGKCVPESEC 351
           +G   +  C    EP C    PE  D V     C    C C +  VR++ TGKCV +++C
Sbjct: 78  EGDEELKACGSACEPTCDNENPEC-DLV-----CMTNVCQCKKGLVRDSATGKCVEKNKC 131


>U42830-3|AAC48275.1|  195|Caenorhabditis elegans Hypothetical
           protein C53B7.2 protein.
          Length = 195

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +1

Query: 202 CPQMAEPDCXXPEVHDFVDHVGPCDVPQCFCDRPNVRNTKTGKCVPESEC 351
           C QM  P C  P     VD    C  P C C  P    + + +C+P + C
Sbjct: 38  CTQMCPPTCESPNPQCRVD----CTRPSCTC-LPGHVYSNSRQCIPANSC 82


>Z81573-3|CAB04624.3|  398|Caenorhabditis elegans Hypothetical
           protein M02G9.2 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = +1

Query: 172 CPKGXXSVLYCPQMAEPDCXXPEVHDFVDHVGPCDVPQCFCDRPNVRNTKTGKCVPESEC 351
           C  G      C  M  P+    ++   +    P   P+C C   NVRN  TG  +P    
Sbjct: 30  CTPGEAPKCGCQVMPTPEIGGGQM---ICTCSPPVPPKCVCTEGNVRNIITGPSLPALFK 86

Query: 352 **NCVN 369
             NCV+
Sbjct: 87  PYNCVS 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,957,244
Number of Sequences: 27780
Number of extensions: 107185
Number of successful extensions: 203
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)