Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_C24
         (1322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    38   0.003
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 35/151 (23%), Positives = 42/151 (27%), Gaps = 6/151 (3%)
 Frame = +2

Query: 695  RESXPQPXXARNRXXXPXARHRXGKPAPXXAXXXRP------PXPGRXKSRXAPTXPRXX 856
            R   P P   RNR   P          P      R       P P + +S   P  PR  
Sbjct: 310  RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSA 369

Query: 857  RXAGXXAXXXPXXXXRXRXSXPPNPPHXHXDSXXXRAPXAPAXQXTRXPAHXGPTAPPRT 1036
               G      P    R   + P  PP     S     P   A + +  P    P+ PP  
Sbjct: 370  PSTGRQPP--PLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSA 427

Query: 1037 PXXXGXPRPXTXPTRXSNRAXARXXTPXAPP 1129
            P       P + P             P APP
Sbjct: 428  PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
 Frame = +2

Query: 914  SXPPNPPHXHXDSXXXRAPXAPAXQXTRXPAHXGPTAPPRTPXXXG-XPRPXTXPTRXSN 1090
            S PP PP     +    AP AP       P   GP  PP  P   G  P P   P    +
Sbjct: 731  SPPPPPPAVIVPTP---AP-APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVS 786

Query: 1091 RAXARXXTPXAPPAXP 1138
               +R   P AP A P
Sbjct: 787  AGGSRYYAP-APQAEP 801


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.132    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,269
Number of Sequences: 5004
Number of extensions: 15663
Number of successful extensions: 38
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 725319970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)