Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_C24
(1322 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 38 0.021
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 38 0.021
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 38 0.021
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 37 0.037
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 37 0.037
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 36 0.064
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 36 0.084
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 35 0.11
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 35 0.11
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 35 0.11
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 33 0.45
Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 32 0.79
Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 32 0.79
X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 32 0.79
X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 32 0.79
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 31 2.4
Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical pr... 30 3.2
Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical pr... 30 3.2
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 30 3.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 4.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 4.2
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 30 4.2
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 7.3
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 29 9.7
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical protein
F23H12.4 protein.
Length = 301
Score = 37.5 bits (83), Expect = 0.021
Identities = 33/122 (27%), Positives = 37/122 (30%), Gaps = 1/122 (0%)
Frame = +2
Query: 764 GKPAPXXAXXXRPPXPGRXKSRXAPTXPRXXRXAGXXAXXXPXXXXRXRXSX-PPNPPHX 940
G P P A +P PGR + P P A P + PP PP
Sbjct: 105 GPPGPAGAPG-KPGKPGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGA 163
Query: 941 HXDSXXXRAPXAPAXQXTRXPAHXGPTAPPRTPXXXGXPRPXTXPTRXSNRAXARXXTPX 1120
D P P P GP PP G P P P A + TP
Sbjct: 164 PGDPGEAGTPGRPGTDAA--PGSPGPRGPPGPAGEAGAPGPAGEP---GTPAISEPLTPG 218
Query: 1121 AP 1126
AP
Sbjct: 219 AP 220
Score = 31.1 bits (67), Expect = 1.8
Identities = 17/55 (30%), Positives = 17/55 (30%)
Frame = +2
Query: 965 APXAPAXQXTRXPAHXGPTAPPRTPXXXGXPRPXTXPTRXSNRAXARXXTPXAPP 1129
AP P P GP PP P G P P R A P PP
Sbjct: 137 APCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPP 191
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 37.5 bits (83), Expect = 0.021
Identities = 33/122 (27%), Positives = 37/122 (30%), Gaps = 1/122 (0%)
Frame = +2
Query: 764 GKPAPXXAXXXRPPXPGRXKSRXAPTXPRXXRXAGXXAXXXPXXXXRXRXSX-PPNPPHX 940
G P P A +P PGR + P P A P + PP PP
Sbjct: 100 GPPGPAGAPG-KPGKPGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGA 158
Query: 941 HXDSXXXRAPXAPAXQXTRXPAHXGPTAPPRTPXXXGXPRPXTXPTRXSNRAXARXXTPX 1120
D P P P GP PP G P P P A + TP
Sbjct: 159 PGDPGEAGTPGRPGTDAA--PGSPGPRGPPGPAGEAGAPGPAGEP---GTPAISEPLTPG 213
Query: 1121 AP 1126
AP
Sbjct: 214 AP 215
Score = 31.1 bits (67), Expect = 1.8
Identities = 17/55 (30%), Positives = 17/55 (30%)
Frame = +2
Query: 965 APXAPAXQXTRXPAHXGPTAPPRTPXXXGXPRPXTXPTRXSNRAXARXXTPXAPP 1129
AP P P GP PP P G P P R A P PP
Sbjct: 132 APCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPP 186
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.elegans
(nematode)collagen 1 (col-1) gene, complete cds. ).
Length = 296
Score = 37.5 bits (83), Expect = 0.021
Identities = 33/122 (27%), Positives = 37/122 (30%), Gaps = 1/122 (0%)
Frame = +2
Query: 764 GKPAPXXAXXXRPPXPGRXKSRXAPTXPRXXRXAGXXAXXXPXXXXRXRXSX-PPNPPHX 940
G P P A +P PGR + P P A P + PP PP
Sbjct: 100 GPPGPAGAPG-KPGKPGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGA 158
Query: 941 HXDSXXXRAPXAPAXQXTRXPAHXGPTAPPRTPXXXGXPRPXTXPTRXSNRAXARXXTPX 1120
D P P P GP PP G P P P A + TP
Sbjct: 159 PGDPGEAGTPGRPGTDAA--PGSPGPRGPPGPAGEAGAPGPAGEP---GTPAISEPLTPG 213
Query: 1121 AP 1126
AP
Sbjct: 214 AP 215
Score = 31.1 bits (67), Expect = 1.8
Identities = 17/55 (30%), Positives = 17/55 (30%)
Frame = +2
Query: 965 APXAPAXQXTRXPAHXGPTAPPRTPXXXGXPRPXTXPTRXSNRAXARXXTPXAPP 1129
AP P P GP PP P G P P R A P PP
Sbjct: 132 APCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPP 186
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein 43
protein.
Length = 303
Score = 36.7 bits (81), Expect = 0.037
Identities = 33/122 (27%), Positives = 37/122 (30%), Gaps = 1/122 (0%)
Frame = +2
Query: 764 GKPAPXXAXXXRPPXPGRXKSRXAPTXPRXXRXAGXXAXXXPXXXXRXRXSX-PPNPPHX 940
G P P +P PGR + P P A P + PP PP
Sbjct: 107 GPPGPAGVPG-KPGKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGA 165
Query: 941 HXDSXXXRAPXAPAXQXTRXPAHXGPTAPPRTPXXXGXPRPXTXPTRXSNRAXARXXTPX 1120
D P P T P GP PP P G P P A + TP
Sbjct: 166 PGDPGEAGTPGRPGTDAT--PGLPGPRGPPGPPGEAGQPGPQGD---AGTPAQSEPLTPG 220
Query: 1121 AP 1126
AP
Sbjct: 221 AP 222
Score = 33.5 bits (73), Expect = 0.34
Identities = 18/58 (31%), Positives = 18/58 (31%)
Frame = +2
Query: 965 APXAPAXQXTRXPAHXGPTAPPRTPXXXGXPRPXTXPTRXSNRAXARXXTPXAPPAXP 1138
AP P P GP PP P G P P R A P PP P
Sbjct: 139 APCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDATPGLPGPRGPPGPP 196
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen protein.
Length = 303
Score = 36.7 bits (81), Expect = 0.037
Identities = 33/122 (27%), Positives = 37/122 (30%), Gaps = 1/122 (0%)
Frame = +2
Query: 764 GKPAPXXAXXXRPPXPGRXKSRXAPTXPRXXRXAGXXAXXXPXXXXRXRXSX-PPNPPHX 940
G P P +P PGR + P P A P + PP PP
Sbjct: 107 GPPGPAGVPG-KPGKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGA 165
Query: 941 HXDSXXXRAPXAPAXQXTRXPAHXGPTAPPRTPXXXGXPRPXTXPTRXSNRAXARXXTPX 1120
D P P T P GP PP P G P P A + TP
Sbjct: 166 PGDPGEAGTPGRPGTDAT--PGLPGPRGPPGPPGEAGQPGPQGD---AGTPAQSEPLTPG 220
Query: 1121 AP 1126
AP
Sbjct: 221 AP 222
Score = 33.5 bits (73), Expect = 0.34
Identities = 18/58 (31%), Positives = 18/58 (31%)
Frame = +2
Query: 965 APXAPAXQXTRXPAHXGPTAPPRTPXXXGXPRPXTXPTRXSNRAXARXXTPXAPPAXP 1138
AP P P GP PP P G P P R A P PP P
Sbjct: 139 APCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDATPGLPGPRGPPGPP 196
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical protein
C09G5.6 protein.
Length = 948
Score = 35.9 bits (79), Expect = 0.064
Identities = 25/86 (29%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Frame = +2
Query: 887 PXXXXRXRXSXPPNPPHXHXDSXXXRAPXAPAXQXTRXPAHXGPTAP----PRTPXXXGX 1054
P R + PP P DS P +P TR P + GP P P P G
Sbjct: 234 PYKPTRSPNTPPPRQPSGGYDSDGQTPPSSPRIYNTRRPNNHGPGYPEDQVPTAPPVPGQ 293
Query: 1055 PR-PXTXPTRXSNRAXARXXTPXAPP 1129
R P T N R + PP
Sbjct: 294 QRVPPTQTRNPPNPTNTRQPSRPVPP 319
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein 33
protein.
Length = 304
Score = 35.5 bits (78), Expect = 0.084
Identities = 24/74 (32%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Frame = +2
Query: 920 PPNPPHXHXDSXXXRAPXAPAXQXTRXPAHXGPTAPPRTPXXXGXPRPXTXPTRXSNRAX 1099
PP PP D+ AP AP P GP PP P G P P R + A
Sbjct: 160 PPGPPGAPGDAGTNGAPGAPGGD--APPGEAGPKGPPGPPGSPGAP---GEPGRPGDDAP 214
Query: 1100 ARXXTPXAP-PAXP 1138
+ P P P P
Sbjct: 215 SEPLIPGEPGPQGP 228
Score = 29.5 bits (63), Expect = 5.6
Identities = 31/117 (26%), Positives = 32/117 (27%)
Frame = +2
Query: 707 PQPXXARNRXXXPXARHRXGKPAPXXAXXXRPPXPGRXKSRXAPTXPRXXRXAGXXAXXX 886
P P A A G AP + P PG S AP P G A
Sbjct: 161 PGPPGAPGDAGTNGAPGAPGGDAPPGEAGPKGP-PGPPGSPGAPGEPGRP---GDDAPSE 216
Query: 887 PXXXXRXRXSXPPNPPHXHXDSXXXRAPXAPAXQXTRXPAHXGPTAPPRTPXXXGXP 1057
P PP PP AP P P GP P P G P
Sbjct: 217 PLIPGEPGPQGPPGPPGQAGPDGQPGAPGGPG-----TPGSKGPPGNPGAPGADGKP 268
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein 34
protein.
Length = 299
Score = 35.1 bits (77), Expect = 0.11
Identities = 26/99 (26%), Positives = 31/99 (31%), Gaps = 1/99 (1%)
Frame = +2
Query: 764 GKPAPXXAXXXRPPXPGRXKSRXAPTXP-RXXRXAGXXAXXXPXXXXRXRXSXPPNPPHX 940
G P P +P PG+ + P P R + P PP PP
Sbjct: 103 GPPGPAGTPG-KPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGP 161
Query: 941 HXDSXXXRAPXAPAXQXTRXPAHXGPTAPPRTPXXXGXP 1057
DS +P P P GP PP P G P
Sbjct: 162 PGDSGEPGSPGLPGQDAA--PGEPGPKGPPGPPGAPGAP 198
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 35.1 bits (77), Expect = 0.11
Identities = 27/101 (26%), Positives = 33/101 (32%), Gaps = 1/101 (0%)
Frame = +2
Query: 764 GKPAPXXAXXXRP-PXPGRXKSRXAPTXPRXXRXAGXXAXXXPXXXXRXRXSXPPNPPHX 940
G P P P P G ++ P P AG + P R P +PP
Sbjct: 99 GYPVPGQEGHQVPAPQHGDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPR 158
Query: 941 HXDSXXXRAPXAPAXQXTRXPAHXGPTAPPRTPXXXGXPRP 1063
P +P + R P P PPRTP P P
Sbjct: 159 RPPM----TPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPP 195
Score = 31.9 bits (69), Expect = 1.0
Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Frame = +2
Query: 914 SXPPNPPHXHXDSXXXRAPXAPAXQXTRXPAHXGPTA--PPRTPXXXGXPRPXTXPTRXS 1087
S PP PP + P P + R P P PP TP P T P+
Sbjct: 121 SPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEP 180
Query: 1088 NRAXARXXTPXAPP 1129
+P PP
Sbjct: 181 RNPPRTPPSPIPPP 194
Score = 30.3 bits (65), Expect = 3.2
Identities = 18/58 (31%), Positives = 18/58 (31%)
Frame = +2
Query: 977 PAXQXTRXPAHXGPTAPPRTPXXXGXPRPXTXPTRXSNRAXARXXTPXAPPAXPRXXQ 1150
PA Q A P PPR G P P R R P PP P Q
Sbjct: 111 PAPQHGDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQ 168
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular collagen
RAM-4 protein.
Length = 299
Score = 35.1 bits (77), Expect = 0.11
Identities = 26/99 (26%), Positives = 31/99 (31%), Gaps = 1/99 (1%)
Frame = +2
Query: 764 GKPAPXXAXXXRPPXPGRXKSRXAPTXP-RXXRXAGXXAXXXPXXXXRXRXSXPPNPPHX 940
G P P +P PG+ + P P R + P PP PP
Sbjct: 103 GPPGPAGTPG-KPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGP 161
Query: 941 HXDSXXXRAPXAPAXQXTRXPAHXGPTAPPRTPXXXGXP 1057
DS +P P P GP PP P G P
Sbjct: 162 PGDSGEPGSPGLPGQDAA--PGEPGPKGPPGPPGAPGAP 198
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 33.1 bits (72), Expect = 0.45
Identities = 33/125 (26%), Positives = 39/125 (31%), Gaps = 6/125 (4%)
Frame = +2
Query: 800 PPXPGRXKSRXAPTXP----RXXRXAGXXAXXXPXXXXRXRXSXPPNPPHXHXDSXXXRA 967
P PGR AP P R + P + PP PP D+ +
Sbjct: 116 PGKPGRPGKAGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPAGPPGPPGPAGDAGSDGS 175
Query: 968 PXAPAXQXTRXPA-HXGPTAPPRTPXXXGXPRPXTXPTRXSNRAXARXXTPXAP-PAXPR 1141
P AP A GP P P G P + + TP AP PA P
Sbjct: 176 PGAPGSDGQPGAAGDKGPAGPNGNPGAPG------SPGKPGEDGKSEPITPGAPGPAGPP 229
Query: 1142 XXQXP 1156
Q P
Sbjct: 230 GPQGP 234
>Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical protein
F15H10.2 protein.
Length = 316
Score = 32.3 bits (70), Expect = 0.79
Identities = 24/87 (27%), Positives = 30/87 (34%), Gaps = 1/87 (1%)
Frame = +2
Query: 800 PPXPGRXKSRXAPTX-PRXXRXAGXXAXXXPXXXXRXRXSXPPNPPHXHXDSXXXRAPXA 976
PP P + P+ P +G A P + PP P + AP A
Sbjct: 177 PPGPSGAPGQKGPSGAPGAPGQSGGAALPGPPGP-----AGPPGPAGQPGSNGNAGAPGA 231
Query: 977 PAXQXTRXPAHXGPTAPPRTPXXXGXP 1057
P Q P GP PP +P G P
Sbjct: 232 PG-QVVDVPGTPGPAGPPGSPGPAGAP 257
>Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical protein
F15H10.1 protein.
Length = 316
Score = 32.3 bits (70), Expect = 0.79
Identities = 24/87 (27%), Positives = 30/87 (34%), Gaps = 1/87 (1%)
Frame = +2
Query: 800 PPXPGRXKSRXAPTX-PRXXRXAGXXAXXXPXXXXRXRXSXPPNPPHXHXDSXXXRAPXA 976
PP P + P+ P +G A P + PP P + AP A
Sbjct: 177 PPGPSGAPGQKGPSGAPGAPGQSGGAALPGPPGP-----AGPPGPAGQPGSNGNAGAPGA 231
Query: 977 PAXQXTRXPAHXGPTAPPRTPXXXGXP 1057
P Q P GP PP +P G P
Sbjct: 232 PG-QVVDVPGTPGPAGPPGSPGPAGAP 257
>X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 32.3 bits (70), Expect = 0.79
Identities = 24/87 (27%), Positives = 30/87 (34%), Gaps = 1/87 (1%)
Frame = +2
Query: 800 PPXPGRXKSRXAPTX-PRXXRXAGXXAXXXPXXXXRXRXSXPPNPPHXHXDSXXXRAPXA 976
PP P + P+ P +G A P + PP P + AP A
Sbjct: 177 PPGPSGAPGQKGPSGAPGAPGQSGGAALPGPPGP-----AGPPGPAGQPGSNGNAGAPGA 231
Query: 977 PAXQXTRXPAHXGPTAPPRTPXXXGXP 1057
P Q P GP PP +P G P
Sbjct: 232 PG-QVVDVPGTPGPAGPPGSPGPAGAP 257
>X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 32.3 bits (70), Expect = 0.79
Identities = 24/87 (27%), Positives = 30/87 (34%), Gaps = 1/87 (1%)
Frame = +2
Query: 800 PPXPGRXKSRXAPTX-PRXXRXAGXXAXXXPXXXXRXRXSXPPNPPHXHXDSXXXRAPXA 976
PP P + P+ P +G A P + PP P + AP A
Sbjct: 177 PPGPSGAPGQKGPSGAPGAPGQSGGAALPGPPGP-----AGPPGPAGQPGSNGNAGAPGA 231
Query: 977 PAXQXTRXPAHXGPTAPPRTPXXXGXP 1057
P Q P GP PP +P G P
Sbjct: 232 PG-QVVDVPGTPGPAGPPGSPGPAGAP 257
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical protein
F02D10.1 protein.
Length = 316
Score = 31.5 bits (68), Expect = 1.4
Identities = 21/73 (28%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Frame = +2
Query: 920 PPNPPHXHXDSXXXRAPXAPAXQXTRXPAHXGPTAPP---RTPXXXGXPRPXTXPTRXSN 1090
P P + AP P+ P GP PP TP G P P P S
Sbjct: 137 PGAPGNPGASGKGAAAPCEPSTPPPCQPCPAGPPGPPGPDGTPGEPGGPGPAGSPAGPSG 196
Query: 1091 RAXARXXTPXAPP 1129
A P PP
Sbjct: 197 PGPAGPPGPAGPP 209
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical protein
Y48E1B.1 protein.
Length = 497
Score = 30.7 bits (66), Expect = 2.4
Identities = 18/57 (31%), Positives = 21/57 (36%)
Frame = +2
Query: 920 PPNPPHXHXDSXXXRAPXAPAXQXTRXPAHXGPTAPPRTPXXXGXPRPXTXPTRXSN 1090
PP PP D P A + T P P APP P P P P+ S+
Sbjct: 324 PPPPPPMKLDPSPQ--PAATPVEITEIPPIISPPAPPPPPPPPPPPPPPQTPSASSS 378
>Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical protein
F57B1.4 protein.
Length = 317
Score = 30.3 bits (65), Expect = 3.2
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +2
Query: 920 PPNPPHXHXDSXXXRAPXAPAXQXTRXPAHXGPTAPPRTPXXXGXP 1057
PP P + AP AP Q P GP PP P G P
Sbjct: 214 PPGPSGQPGSNGNAGAPGAPG-QVVDVPGTPGPAGPPGPPGPAGAP 258
>Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical protein
F57B1.3 protein.
Length = 313
Score = 30.3 bits (65), Expect = 3.2
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +2
Query: 920 PPNPPHXHXDSXXXRAPXAPAXQXTRXPAHXGPTAPPRTPXXXGXP 1057
PP P + AP AP Q P GP PP P G P
Sbjct: 210 PPGPSGQPGSNGNAGAPGAPG-QVVDVPGTPGPAGPPGPPGPAGAP 254
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 30.3 bits (65), Expect = 3.2
Identities = 17/63 (26%), Positives = 20/63 (31%)
Frame = +2
Query: 914 SXPPNPPHXHXDSXXXRAPXAPAXQXTRXPAHXGPTAPPRTPXXXGXPRPXTXPTRXSNR 1093
S PP PP P P A GP+ PP P G P P + +
Sbjct: 178 SGPPGPPGQPGQPGQRGPPGEPGALLPGGDAPPGPSGPPGRPGAPGQPGKAGSPGQDGSN 237
Query: 1094 AXA 1102
A
Sbjct: 238 GDA 240
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 4.2
Identities = 21/91 (23%), Positives = 25/91 (27%), Gaps = 1/91 (1%)
Frame = +2
Query: 770 PAPXXAXXXRPPXPGRXKSRXAPTXPRXXRXAGXXAXXXPXXXX-RXRXSXPPNPPHXHX 946
P P R P P P P G P R PP PP +
Sbjct: 297 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYP 356
Query: 947 DSXXXRAPXAPAXQXTRXPAHXGPTAPPRTP 1039
+ P P + P+ G PP P
Sbjct: 357 SAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 387
Score = 29.5 bits (63), Expect = 5.6
Identities = 18/70 (25%), Positives = 19/70 (27%)
Frame = +2
Query: 920 PPNPPHXHXDSXXXRAPXAPAXQXTRXPAHXGPTAPPRTPXXXGXPRPXTXPTRXSNRAX 1099
PP PP P R P P PPR P P P+R
Sbjct: 317 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPS 376
Query: 1100 ARXXTPXAPP 1129
P PP
Sbjct: 377 GHGMIPPPPP 386
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 4.2
Identities = 21/91 (23%), Positives = 25/91 (27%), Gaps = 1/91 (1%)
Frame = +2
Query: 770 PAPXXAXXXRPPXPGRXKSRXAPTXPRXXRXAGXXAXXXPXXXX-RXRXSXPPNPPHXHX 946
P P R P P P P G P R PP PP +
Sbjct: 307 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYP 366
Query: 947 DSXXXRAPXAPAXQXTRXPAHXGPTAPPRTP 1039
+ P P + P+ G PP P
Sbjct: 367 SAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 397
Score = 29.5 bits (63), Expect = 5.6
Identities = 18/70 (25%), Positives = 19/70 (27%)
Frame = +2
Query: 920 PPNPPHXHXDSXXXRAPXAPAXQXTRXPAHXGPTAPPRTPXXXGXPRPXTXPTRXSNRAX 1099
PP PP P R P P PPR P P P+R
Sbjct: 327 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPS 386
Query: 1100 ARXXTPXAPP 1129
P PP
Sbjct: 387 GHGMIPPPPP 396
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.9 bits (64), Expect = 4.2
Identities = 21/81 (25%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Frame = +2
Query: 920 PPNPPHXHXDSXXXRAPXAPAXQXTRX-PAHXGPTAPPRTPXXXGXPRPXTXPTRXSNRA 1096
PP PP ++ AP P P GP PP P G P +
Sbjct: 182 PPGPPGPDGNAGPAGAPGVPGPDGDAGSPPPPGPPGPPGPPGNDGQPGAPGQDGQPGAPG 241
Query: 1097 XARXXTPXAP-PAXPRXXQXP 1156
+P P PA P P
Sbjct: 242 TNTVNSPGGPGPAGPPGPPGP 262
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter than
wild-typeprotein 3 protein.
Length = 302
Score = 29.1 bits (62), Expect = 7.3
Identities = 28/118 (23%), Positives = 31/118 (26%), Gaps = 8/118 (6%)
Frame = +2
Query: 800 PPXPGRXKSRXAPTXPRXXRXAGXXAXXXPXXXXRXRXSX-PPNPPHXHXDSXXXRAPXA 976
P PGR AP P G P + PP PP P
Sbjct: 116 PGPPGRDGRPGAPGRPGNPGPPGRDGALLPGPPPKPPCQKCPPGPPGPAGPPGPKGLPGP 175
Query: 977 PAXQXTRX-------PAHXGPTAPPRTPXXXGXPRPXTXPTRXSNRAXARXXTPXAPP 1129
T P GP+ P P G P P + N A P PP
Sbjct: 176 QGDAGTSGQDGVPGLPGPPGPSGPQGAPGVPGEKGPTGEPGKVINGAPPGPPGPPGPP 233
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 28.7 bits (61), Expect = 9.7
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = +2
Query: 908 RXSXPPNPPHXHXDSXXXRAPXAPAXQXTRXPAHXGPTAPPR 1033
R PP+PP +AP P TR P P PR
Sbjct: 331 RAPLPPSPPPRTSKRPVTQAPTTPRATTTRRPTTTTPRPTPR 372
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.311 0.132 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,319,928
Number of Sequences: 27780
Number of extensions: 183371
Number of successful extensions: 845
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3704777368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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