Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_C23
(1103 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 1.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 1.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.5
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 27 6.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 6.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 6.2
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 26 8.1
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -1
Query: 1100 GXXGAXGGVXGXXXWGXWGGGXXGXGGXGGXWRGSGXXG 984
G G GG G G + GG G GG G RG G G
Sbjct: 6 GSRGGRGGSRGGR--GGFNGGRGGFGGGRGGARGGGRGG 42
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 6.2
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -1
Query: 242 PRXPPXPPPPPXXPP 198
P P PPPPP PP
Sbjct: 234 PLPAPPPPPPPTLPP 248
Score = 24.2 bits (50), Expect(2) = 1.2
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -1
Query: 248 PXPRXPPXPPPPP 210
P PP PPPPP
Sbjct: 184 PSDYNPPPPPPPP 196
Score = 23.0 bits (47), Expect(2) = 1.2
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1
Query: 224 PPPPPXXPP 198
PPPPP PP
Sbjct: 189 PPPPPPPPP 197
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 251 PPXPRXPPXPPPPPXXPP 198
PP P PP P PP PP
Sbjct: 1715 PPPPSAPPMPAGPPSAPP 1732
Score = 27.5 bits (58), Expect = 3.5
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -1
Query: 251 PPXPRXPPXPPPPP 210
PP P PP PPPP
Sbjct: 1721 PPMPAGPPSAPPPP 1734
Score = 26.2 bits (55), Expect = 8.1
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Frame = +2
Query: 977 PPXXXXPTPANXPXT--PPXPXXPXPTXPTTXRPTHXP 1084
PP PTP P + PP P P P + P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 26.2 bits (55), Expect = 8.1
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +2
Query: 968 TXXPPXXXXPTPANXPXTPPXPXX-PXPTXPTTXRPTHXPXP 1090
T PP P P + P P P P P P + P+ P P
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS-VPNP 1746
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 5/27 (18%)
Frame = -1
Query: 263 VFXXPPXPRXPPX-----PPPPPXXPP 198
+ PP P PP PPPPP PP
Sbjct: 757 IMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 4.7
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Frame = +2
Query: 977 PPXXXXPTPANX--PXTPPXP--XXPXPTXPTTXRPTHXPXPPXHP 1102
PP PTPA P PP P P P P P PP P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/40 (30%), Positives = 14/40 (35%)
Frame = +2
Query: 980 PXXXXPTPANXPXTPPXPXXPXPTXPTTXRPTHXPXPPXH 1099
P P P PP P P T+ RP+ P H
Sbjct: 188 PSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGH 227
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/33 (36%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Frame = +2
Query: 977 PPXXXXPTPANX-PXTPPXPXXPXPTXPTTXRP 1072
PP P P P PP P P P P P
Sbjct: 107 PPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEP 139
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 6.2
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -1
Query: 242 PRXPPXPPPPPXXPP 198
P PP PPPPP P
Sbjct: 6 PGNPPPPPPPPGFEP 20
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Frame = +2
Query: 977 PPXXXXP---TPANXPXTPPXPXXPXPTXPTTXRPTHXPXPP 1093
PP P T ++ P +PP P P P + P PP
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294
Score = 26.2 bits (55), Expect = 8.1
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +2
Query: 965 RTXXPPXXXXPTPANXPXTPPXPXXPXPTXPTTXR--PTHXPXPPXHP 1102
RT PP PTP + P + P P P P+ P P PP P
Sbjct: 411 RTSTPPV---PTPPSLPPSAP-PSLPPSAPPSLPMGAPAAPPLPPSAP 454
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 8.1
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -1
Query: 260 FXXPPXPRXPPXPPPPPXXPP 198
F PR PP PPPP P
Sbjct: 217 FRHKKVPRGPPSPPPPVLHSP 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,705
Number of Sequences: 5004
Number of extensions: 7992
Number of successful extensions: 208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 583709326
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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