Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_C22
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical ...   124   9e-29
AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical ...   124   9e-29
AL034365-5|CAA22258.1|  172|Caenorhabditis elegans Hypothetical ...    54   1e-07
Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    29   3.4  
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    29   6.0  

>AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical
           protein F40A3.3b protein.
          Length = 185

 Score =  124 bits (299), Expect = 9e-29
 Identities = 54/98 (55%), Positives = 71/98 (72%)
 Frame = +2

Query: 275 RXNTQAESKLKKVMS*LQLR*KTSLQXKWDAEPGQYYTLAMTXPDAPSRKXPTFRXWHHW 454
           + N+  E+ L  V++  Q+  K + + KWDAEPG  YTL  T PDAPSRK PT+R WHHW
Sbjct: 28  KFNSGVEANLGNVLTPTQV--KDTPEVKWDAEPGALYTLIKTDPDAPSRKEPTYREWHHW 85

Query: 455 LVGHIXGXEVHSGXTLSQYVGSGPPEKTGLHRYVFLLY 568
           LV +I G ++  G TLS+Y+G+GPP KTGLHRYV+L+Y
Sbjct: 86  LVVNIPGNDIAKGDTLSEYIGAGPPPKTGLHRYVYLIY 123



 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
 Frame = +1

Query: 208 AKSFEASQVVPDVIPK-APAALLQVXYPSGVEVKEGNELTPTQVKDEP 348
           A++F   +V+PDV+    P+ ++ V + SGVE   GN LTPTQVKD P
Sbjct: 3   AEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTP 50


>AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical
           protein F40A3.3a protein.
          Length = 221

 Score =  124 bits (299), Expect = 9e-29
 Identities = 54/98 (55%), Positives = 71/98 (72%)
 Frame = +2

Query: 275 RXNTQAESKLKKVMS*LQLR*KTSLQXKWDAEPGQYYTLAMTXPDAPSRKXPTFRXWHHW 454
           + N+  E+ L  V++  Q+  K + + KWDAEPG  YTL  T PDAPSRK PT+R WHHW
Sbjct: 64  KFNSGVEANLGNVLTPTQV--KDTPEVKWDAEPGALYTLIKTDPDAPSRKEPTYREWHHW 121

Query: 455 LVGHIXGXEVHSGXTLSQYVGSGPPEKTGLHRYVFLLY 568
           LV +I G ++  G TLS+Y+G+GPP KTGLHRYV+L+Y
Sbjct: 122 LVVNIPGNDIAKGDTLSEYIGAGPPPKTGLHRYVYLIY 159



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
 Frame = +1

Query: 190 RAMSTVA-KSFEASQVVPDVIPK-APAALLQVXYPSGVEVKEGNELTPTQVKDEP 348
           R ++T+A ++F   +V+PDV+    P+ ++ V + SGVE   GN LTPTQVKD P
Sbjct: 32  RGLATMAAEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTP 86


>AL034365-5|CAA22258.1|  172|Caenorhabditis elegans Hypothetical
           protein Y69E1A.5 protein.
          Length = 172

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = +2

Query: 365 AEPGQYYTLAMTXPDAPSRKXPTFRXWHHWLVGHIXGXEVHSGXTLSQ----YVGSGPPE 532
           A+P   YT+ M  PD  SRK P+   W HWLV +I    +  G    Q    Y    P  
Sbjct: 57  ADPESIYTVLMIDPDNLSRKNPSVAEWLHWLVCNIPASNIIDGINGGQHQMAYGSPAPGP 116

Query: 533 KTGLHRYVFLLY 568
           +T LHRYV L++
Sbjct: 117 RTDLHRYVILMW 128


>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 462 ATSXAXRYTPAXLCPSTWALDLRKRQACTDTCSSCTNXHRXSXSXS 599
           + S    +     C ST+    +K Q C  TCS C++    S S S
Sbjct: 5   SASNCANWVANGFCTSTFYTTAQKTQYCASTCSLCSDSSDSSSSSS 50


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -2

Query: 546 CRPVFSGG-PEPTYWDKVSPECTSXPWMWPTSQWCXSRNVGSLRDG--ASGSVMA 391
           CRP  SGG P PTY D  S      P    T+Q    + VG++ +G   +G  MA
Sbjct: 18  CRPHTSGGAPNPTYSD-ASTTLLKYPLAAGTNQNRRRQQVGTMNNGDPVAGGPMA 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,174,424
Number of Sequences: 27780
Number of extensions: 234162
Number of successful extensions: 551
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)