Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_C21
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical p...    34   0.16 
U42830-3|AAC48275.1|  195|Caenorhabditis elegans Hypothetical pr...    33   0.36 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    32   0.63 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    32   0.63 

>U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical
           protein C25E10.10 protein.
          Length = 169

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 170 KGXHSVLYCPQMAEPDC--EXPEVHDFVDHVGPCDVPQCFCDRPNVRNTKTGKCVPESEC 343
           +G   +  C    EP C  E PE  D V     C    C C +  VR++ TGKCV +++C
Sbjct: 78  EGDEELKACGSACEPTCDNENPEC-DLV-----CMTNVCQCKKGLVRDSATGKCVEKNKC 131


>U42830-3|AAC48275.1|  195|Caenorhabditis elegans Hypothetical
           protein C53B7.2 protein.
          Length = 195

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 194 CPQMAEPDCEXPEVHDFVDHVGPCDVPQCFCDRPNVRNTKTGKCVPESEC 343
           C QM  P CE P     VD    C  P C C  P    + + +C+P + C
Sbjct: 38  CTQMCPPTCESPNPQCRVD----CTRPSCTC-LPGHVYSNSRQCIPANSC 82


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 15/53 (28%), Positives = 17/53 (32%)
 Frame = +3

Query: 648 PPXXPXXKTXXPPXXASLXFXPXPGXXXXPXXXXXXXPPPXXXPXPXXXXXPP 806
           PP  P  +T  PP    +   P P     P       PPP     P     PP
Sbjct: 299 PPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPP 351


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 15/53 (28%), Positives = 17/53 (32%)
 Frame = +3

Query: 648 PPXXPXXKTXXPPXXASLXFXPXPGXXXXPXXXXXXXPPPXXXPXPXXXXXPP 806
           PP  P  +T  PP    +   P P     P       PPP     P     PP
Sbjct: 309 PPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPP 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,797,000
Number of Sequences: 27780
Number of extensions: 183269
Number of successful extensions: 366
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)