Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_C20
         (915 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0019 + 403078-404211                                             29   3.9  
06_03_1270 - 28867654-28868076,28868394-28868785,28869438-288695...    29   6.8  
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41...    28   9.0  

>09_01_0019 + 403078-404211
          Length = 377

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 377 RQHCREHQKEFQRHSSTQRGRS 312
           R+H R+ +K+  RH S+ RGRS
Sbjct: 207 RKHSRDEEKKTSRHRSSSRGRS 228


>06_03_1270 -
           28867654-28868076,28868394-28868785,28869438-28869588,
           28869727-28869906
          Length = 381

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 20/55 (36%), Positives = 25/55 (45%)
 Frame = -3

Query: 523 QHXWLSXXSFQSFHLNSKFPVGSFFPICKXKV*GLSFAGFGGT*RESASVSIVES 359
           Q  WL   S Q    N   P  +FF I   +V GL + GF G  +E  + S V S
Sbjct: 229 QLAWLRATS-QELQQNLHAPAFAFFHIPIPEVRGLWYTGFKGQYQEGVACSTVNS 282


>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
          Length = 2177

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 353  FDALYNADACTLTSCPTEAGKTQTLDF 433
            F  LYN D   L + PT +GKT   +F
Sbjct: 1370 FTVLYNTDDSVLVAAPTGSGKTICAEF 1396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,809,807
Number of Sequences: 37544
Number of extensions: 252083
Number of successful extensions: 548
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)