Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_C18
(897 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 31 1.5
AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical ... 30 2.0
AL110487-11|CAC42369.1| 624|Caenorhabditis elegans Hypothetical... 30 2.6
AL110487-10|CAC42368.1| 623|Caenorhabditis elegans Hypothetical... 30 2.6
AL110487-9|CAB54435.1| 626|Caenorhabditis elegans Hypothetical ... 30 2.6
AF031837-1|AAC13673.1| 624|Caenorhabditis elegans GLY5c protein. 29 4.5
AF031836-1|AAC13672.1| 626|Caenorhabditis elegans GLY5b protein. 29 4.5
AF031835-1|AAC13671.1| 623|Caenorhabditis elegans GLY5a protein. 29 4.5
U70851-4|AAB09126.1| 266|Caenorhabditis elegans Hypothetical pr... 29 6.0
>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
protein C34F6.1 protein.
Length = 1043
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 707 IENVKKLALSTQIAYSNLARNRFDKNSGDIIQFIYS*HXRHLNKHFSQ 850
++N +L ++ S+L R FDKN ++FIYS + N +Q
Sbjct: 562 VQNTCELTMTKGYGNSHLTRWHFDKNLNKCVKFIYSGEGGNQNMFLTQ 609
>AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical
protein C09E7.5 protein.
Length = 496
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +2
Query: 335 KAPVRAKTATLSAPTSXTDDITKAAKCAKKIY 430
K+P + T T+SAP+S DD T+ A C +++Y
Sbjct: 420 KSPGKNNTVTVSAPSSELDD-TECAICLEEMY 450
>AL110487-11|CAC42369.1| 624|Caenorhabditis elegans Hypothetical
protein Y39E4B.12c protein.
Length = 624
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 193 GFEXNLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 357
GF+ L NW + E + T + R+ + GLF I+ +Y+ G PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYFEKLGTYDPGFD 374
>AL110487-10|CAC42368.1| 623|Caenorhabditis elegans Hypothetical
protein Y39E4B.12b protein.
Length = 623
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 193 GFEXNLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 357
GF+ L NW + E + T + R+ + GLF I+ +Y+ G PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYFEKLGTYDPGFD 374
>AL110487-9|CAB54435.1| 626|Caenorhabditis elegans Hypothetical
protein Y39E4B.12a protein.
Length = 626
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 193 GFEXNLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 357
GF+ L NW + E + T + R+ + GLF I+ +Y+ G PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYFEKLGTYDPGFD 374
>AF031837-1|AAC13673.1| 624|Caenorhabditis elegans GLY5c protein.
Length = 624
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 193 GFEXNLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 357
GF+ L NW + E + T + R+ + GLF I+ Y+ G PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKEYFEKLGTYDPGFD 374
>AF031836-1|AAC13672.1| 626|Caenorhabditis elegans GLY5b protein.
Length = 626
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 193 GFEXNLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 357
GF+ L NW + E + T + R+ + GLF I+ Y+ G PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKEYFEKLGTYDPGFD 374
>AF031835-1|AAC13671.1| 623|Caenorhabditis elegans GLY5a protein.
Length = 623
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 193 GFEXNLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 357
GF+ L NW + E + T + R+ + GLF I+ Y+ G PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKEYFEKLGTYDPGFD 374
>U70851-4|AAB09126.1| 266|Caenorhabditis elegans Hypothetical
protein M02B7.2 protein.
Length = 266
Score = 28.7 bits (61), Expect = 6.0
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -3
Query: 694 NFKFIW--SWNVCLRLPLGALFPXNIQISLHFYAIENVKKLALKHTVLFRGDRIESLA 527
NF F+ W++ + LP A F NI+I +F NVKK +HT F + LA
Sbjct: 157 NFAFVTCGDWDLKVALPSEAKFK-NIEIPEYFNQWINVKKAYAEHTNHFAKGMTQLLA 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,512,992
Number of Sequences: 27780
Number of extensions: 304402
Number of successful extensions: 779
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -