Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_C17
         (929 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    36   0.055
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    33   0.29 
U23449-6|AAC24300.2|  937|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    30   2.7  
AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical...    29   3.6  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   4.7  
L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase prot...    29   6.3  

>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical
           protein Y49E10.10 protein.
          Length = 425

 Score = 35.5 bits (78), Expect = 0.055
 Identities = 29/85 (34%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
 Frame = +1

Query: 658 TPXPLXEIXXYAPXAVXLDPXPNCTXKXKPLXXTRVLPXXTF---PXPXGKXTPPKVVXX 828
           TP P  +    A       P P  T K  P   T+  P  T    P P  K  PP     
Sbjct: 157 TPEPTVKNTTAAEPTTEAPPPP--TTKAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTTNK 214

Query: 829 EVLX-PPXPSPXL*TXPXPNYPPXP 900
           EV    P P P   T P PN PP P
Sbjct: 215 EVTTVAPVPKPAPVTAPAPN-PPAP 238


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 23/92 (25%), Positives = 30/92 (32%)
 Frame = +1

Query: 625 SPPSI*FXTXTTPXPLXEIXXYAPXAVXLDPXPNCTXKXKPLXXTRVLPXXTFPXPXGKX 804
           +PP   +     P P   +  Y   AV +   P       P     V      P P  + 
Sbjct: 66  APPPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPA-----PYPQHAVPAPAPPPAPYPQH 120

Query: 805 TPPKVVXXEVLXPPXPSPXL*TXPXPNYPPXP 900
             P     +   PP P P     P P+YPP P
Sbjct: 121 AVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPP 152


>U23449-6|AAC24300.2|  937|Caenorhabditis elegans Hypothetical
           protein K06A1.6 protein.
          Length = 937

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 438 RRCSGASSGMDGPHRSGADGPQVVCDELDEE 530
           ++ SGA+ GMDG  R+G+   ++VCDE  ++
Sbjct: 54  QQLSGAADGMDGSSRAGSQ--EIVCDEFTKK 82


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/63 (30%), Positives = 22/63 (34%)
 Frame = +1

Query: 712 DPXPNCTXKXKPLXXTRVLPXXTFPXPXGKXTPPKVVXXEVLXPPXPSPXL*TXPXPNYP 891
           +P P    K KP       P   FP P  K  P      +    P P P L   P P + 
Sbjct: 15  EPFPKPMPKSKPKSEPFPSPMP-FPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPKHK 73

Query: 892 PXP 900
           P P
Sbjct: 74  PKP 76


>AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.1 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/69 (30%), Positives = 22/69 (31%)
 Frame = +1

Query: 712 DPXPNCTXKXKPLXXTRVLPXXTFPXPXGKXTPPKVVXXEVLXPPXPSPXL*TXPXPNYP 891
           DP P    K KP       P    P P  K  P      E    P P P     P PN  
Sbjct: 182 DPKPKPKPKPKPKPKPNPKPE---PKPKPKPEPKPKPKPEPKPKPKPKPKPKPKPNPNPK 238

Query: 892 PXPGXQVXP 918
           P P  +  P
Sbjct: 239 PEPKPKPKP 247



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 19/62 (30%), Positives = 21/62 (33%)
 Frame = +1

Query: 715 PXPNCTXKXKPLXXTRVLPXXTFPXPXGKXTPPKVVXXEVLXPPXPSPXL*TXPXPNYPP 894
           P P    K KP       P    P P  K  P      ++   P P P L   P PN  P
Sbjct: 221 PKPKPKPKPKPKPNPNPKPEPK-PKPKPKPKPEPKPKTKLKSEPKPKPKLKPKPKPNPKP 279

Query: 895 XP 900
            P
Sbjct: 280 EP 281


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/62 (27%), Positives = 20/62 (32%)
 Frame = +1

Query: 715 PXPNCTXKXKPLXXTRVLPXXTFPXPXGKXTPPKVVXXEVLXPPXPSPXL*TXPXPNYPP 894
           P P C     P     + P    P P     PP       + PP P P     P  +Y P
Sbjct: 34  PPPMCAPPPLPCPPPPICPPQFCPPPP-MCPPPPPPPPPPMCPPPPPPMPSYSPCQSYAP 92

Query: 895 XP 900
            P
Sbjct: 93  AP 94


>L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase protein
           1 protein.
          Length = 601

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -1

Query: 155 GDRYCEQRNERCESHCDTVCGWWNYAIXRAEVLLKILRE 39
           G  +C +R +    +C   CGW N  +  A++   + R+
Sbjct: 535 GQNFCTRRRQWMAENCQATCGWCN--MNEAQLCASVARQ 571


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,125,923
Number of Sequences: 27780
Number of extensions: 382809
Number of successful extensions: 1244
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)