Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_C17
         (929 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   1.7  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   3.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   5.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   9.1  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 468 PFPNWRRNSAG 436
           P+PNW +N AG
Sbjct: 111 PYPNWAQNKAG 121


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 562 RHLPPRHATGREAXMCALCQ 621
           RH+  +HA  +E   C +C+
Sbjct: 23  RHVADKHAERQEEYRCVICE 42


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 348 LDLDECDRENANHRRTLQ 401
           +D DECDR++ + R+ ++
Sbjct: 1   VDKDECDRKSLSQRKIIR 18


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 505 SSVTNSMKKLGELMSXGR 558
           + + +SMK +GE+M+ GR
Sbjct: 197 TQIGSSMKSVGEVMAIGR 214


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 411 GKVFVMSVDDLHFLDRIRPNPRVERGPSTPRYGLNQLV 298
           G V  +SV       ++RP    +  P T RYG + L+
Sbjct: 196 GMVMYISVFKAEVGSKLRPRSSFQGPPFTYRYGFSFLL 233


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -3

Query: 477 EVHPFPNWRRNSAGPXXRPREFGKVFVMSVDDLHFLD 367
           ++ P+PNW  ++ G         ++ V   D L  LD
Sbjct: 227 KLRPYPNWEWHTVGNCDGLTSVFRIQVDECDRLWILD 263


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 340 LNSWIWTNAIEK 375
           +N+W+WT  IE+
Sbjct: 69  VNNWLWTPFIER 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,332
Number of Sequences: 438
Number of extensions: 5915
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)