Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_C15
         (864 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    50   3e-06
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    46   3e-05
AC025715-3|AAU87815.1|  534|Caenorhabditis elegans Hypothetical ...    29   5.7  

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 22/46 (47%), Positives = 30/46 (65%)
 Frame = +3

Query: 723 ALKAQRKVVKGEHGXRVRKIRNSVHFRRPKTFEPPXHPKYPRKXLP 860
           AL A++KVVKG+     R++R SVHFRRP T +     ++PRK  P
Sbjct: 12  ALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAP 57


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 22/49 (44%), Positives = 29/49 (59%)
 Frame = +3

Query: 714 VTXALKAQRKVVKGEHGXRVRKIRNSVHFRRPKTFEPPXHPKYPRKXLP 860
           V  A++A++ VVKG      + +R SVHFRRPKT      P+Y RK  P
Sbjct: 8   VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAP 56


>AC025715-3|AAU87815.1|  534|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.5 protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 11  YHXVLGNP*DFAPSFVTMPPKKQPEKSWVLR 103
           Y+ V G+P D +P+   + P  QP +SW +R
Sbjct: 3   YNFVHGHPIDTSPTAFDLFPPTQPYRSWEVR 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,818,883
Number of Sequences: 27780
Number of extensions: 141684
Number of successful extensions: 407
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)