Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_C10
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 31 0.16
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 30 0.38
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 1.2
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 3.5
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 27 3.5
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 27 4.7
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 27 4.7
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 26 8.1
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 26 8.1
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 31.5 bits (68), Expect = 0.16
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Frame = +3
Query: 465 VNSEGSWVYEKDVLKITFPLKQ-KQPEDSKRPVAEPTETTPTNVSREEMEFTTESNV--R 635
VNS G+ E + F ++ ++ E+ K + P P S+EE E R
Sbjct: 323 VNSPGALSVEATYINQNFCVQALRETEEEKYKLPHPN---PFYNSKEESEPLAAHGYIYR 379
Query: 636 DVDVGLETAQKTNEIAKAVXATTYAVNIRDDAEFLPI 746
DVD+ LET +K ++ Y N +D +++ I
Sbjct: 380 DVDLSLETDEKPVKLMVRTEVDGYVKNPANDVQYISI 416
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 30.3 bits (65), Expect = 0.38
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 222 SLWSNLANEMQHLDDMMKELSLKFPSIINEGRV 320
+L S L LDD+ K L+L FP++I + RV
Sbjct: 167 ALQSQLVRVNGELDDLQKHLTLSFPTLIAKSRV 199
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 1.2
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = -3
Query: 733 SASSLMLTAYVVAXTAFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTFVGVVSVGSATG 554
S+SS TA + ++ IS + S PTSTS T+ S +S SS + +S S++
Sbjct: 255 SSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSS 314
Query: 553 LLLSS 539
SS
Sbjct: 315 SSFSS 319
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 670 VFWAVSKPTSTSRTLLSVVNSISSRLTFVGVVSVGSATGLLL 545
V+WA+ T L++++S+ T +SV +A GLLL
Sbjct: 88 VWWAIRTITHLEIVGLNILSSLKYGSTLFSWISVANAFGLLL 129
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +3
Query: 201 ESMLDTHSLWSNLANEMQHLDDMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDIN 380
E + + +W+++ +MQ D ++L F I N G++ Q +I L G + ++
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162
Query: 381 VKAKN 395
K N
Sbjct: 163 SKKLN 167
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 113 AAVSAAPQYYHGSSHWPYHHYDPXQSL 193
A +A PQYY +P HY P Q L
Sbjct: 502 ATDAAKPQYYIPKDPYPVPHYYPQQPL 528
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 4.7
Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +3
Query: 444 IQNLPWDVNSEGSW---VYEKDVLKITFPLKQKQPEDSKRPVAEPTETTPTNVSREEMEF 614
+ N+P +V +E S ++KDV + L + E+ + + + + +S ++ E
Sbjct: 29 VSNVPNEVETESSSHEPSFKKDVDEEIPSLTAELSEEEEGEYSSESGRSTPELSPDDFED 88
Query: 615 TT-ESNVRDVDVGLETAQKTNEIAKAVXATTYAVNI 719
E ++D G + T ++A + + Y N+
Sbjct: 89 ADDEEEFEEIDAGYSSDSSTEDVAPGLYESPYDENL 124
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.8 bits (54), Expect = 8.1
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Frame = +3
Query: 219 HSLWSNLANEMQHLDD--MMKELSL-KFPSI-INEGRVEGDKYQISIHLPGY---EQKDI 377
H++ N A E ++D ++K +S F S+ + + R GD + I I + + I
Sbjct: 573 HTIVPNSAPEHPSINDYKILKPISKGAFGSVYLAQKRTTGDYFAIKILKKSNMIAKNQVI 632
Query: 378 NVKAKNGVLMVQANSAF 428
NV+A+ +LM Q S F
Sbjct: 633 NVRAERAILMSQGESPF 649
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/61 (21%), Positives = 27/61 (44%)
Frame = +3
Query: 552 RPVAEPTETTPTNVSREEMEFTTESNVRDVDVGLETAQKTNEIAKAVXATTYAVNIRDDA 731
R + ++ V E+ E T + DV++ + + + N +A+ T+ + DD
Sbjct: 118 RQTIDRKKSLERRVREEQEEKTDNEDDNDVEISTQESLENNGLAEKKDDTSSLATLEDDI 177
Query: 732 E 734
E
Sbjct: 178 E 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,291,587
Number of Sequences: 5004
Number of extensions: 67846
Number of successful extensions: 227
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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