Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_C09
         (1338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.16 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 18/52 (34%), Positives = 18/52 (34%)
 Frame = +3

Query: 135 PPXPXGRGXPXPAAXXPXPAXGPXXRXPGXAPPPXXXTXGRTGXXTXXPPPP 290
           PP P     P PA   P P   P     G  PPP        G     PPPP
Sbjct: 733 PPPPPAVIVPTPAPA-PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 30/104 (28%), Positives = 30/104 (28%), Gaps = 2/104 (1%)
 Frame = +1

Query: 103 AXGPXXXGXXAPXXXXXG-AXRXXRHXXRRXPPXXXXAPPX-PPHPRXXAPXGGRAXXXX 276
           A  P   G  AP     G A R         P     APP  PP      P G  A    
Sbjct: 390 APPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAA--- 446

Query: 277 XXXXXXPXXPXXXGRXXXPPAGPXTXAPXRXGXPTPPPXGAPXP 408
                 P  P         PAG     P     P PPP  AP P
Sbjct: 447 ------PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 25/116 (21%), Positives = 32/116 (27%), Gaps = 5/116 (4%)
 Frame = +3

Query: 162 PXPAAXXPXPAXGPXXRXPGXAPPPXXXTXGRT-----GXXTXXPPPPXXXXXXXXXXXX 326
           P P++     A     + P   PPP     G+         +  PPPP            
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIP 352

Query: 327 XXXXXXXDXGAAPXRXPHTTPXRGAXPPRXAEXPAGPXAXRPPRXAXRPXPPXTPP 494
                     A P   P + P  G  PP  +   A      PP        P  PP
Sbjct: 353 LPPQGR---SAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405



 Score = 27.9 bits (59), Expect = 3.4
 Identities = 33/127 (25%), Positives = 35/127 (27%), Gaps = 1/127 (0%)
 Frame = +3

Query: 117 PXGAXRPPXPXGRGXPXPAAXXPXPAXGPXXRXPGXAPPPXXXTXGRTGXXTXXPPPPXX 296
           P G   PP P  R  P      P  +       P  APPP     GR+      P  P  
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNP-PAPPP--AIPGRSA-----PALPPL 406

Query: 297 XXXXXXXXXXXXXXXXXDXGAAPXRXPHTTPXRGAXPPRXAEXPAGPXA-XRPPRXAXRP 473
                               A P   P   P      P  A  P  P A   PP  A  P
Sbjct: 407 GNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP--AAPPLPPSAPIAPPLPAGMP 464

Query: 474 XPPXTPP 494
             P  PP
Sbjct: 465 AAPPLPP 471


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 331  PPAGPXTXAPXRXGXPTPPPXGAPXP 408
            PP  P + AP +   PTPPP     P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVP 1715



 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/40 (32%), Positives = 15/40 (37%)
 Frame = +3

Query: 117  PXGAXRPPXPXGRGXPXPAAXXPXPAXGPXXRXPGXAPPP 236
            P  A  P        P P +  P P+  P    P  APPP
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
 Frame = +3

Query: 357  AAPXRXPHTTPXRGAXPPRXAEXPAGPXAXRPPRXAXRP---XPPXTPP 494
            A P   P   P   A P   A  P  P    PP  +  P    PP  PP
Sbjct: 1684 AHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
 Frame = +3

Query: 111  PXPXGAXRPPXPXGRGXPXPA-----AXXPXPAXG-PXXRXPGXAPPPXXXTXGRTGXXT 272
            P P GA   P P     P PA        P PA G P    P  APP    + G      
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212

Query: 273  XXPPPP 290
                PP
Sbjct: 1213 PSTAPP 1218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.137    0.454 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,738,870
Number of Sequences: 5004
Number of extensions: 17391
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 735255860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)