Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_C08
         (862 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...   186   8e-46
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...   126   9e-28
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    95   2e-18
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ...    71   3e-11
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    64   3e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    58   3e-07
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ...    58   3e-07
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0...    50   8e-05
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0...    46   0.001
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    44   0.004
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    42   0.020
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.081
UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4; ...    35   3.0  
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur...    34   5.3  
UniRef50_Q02779 Cluster: Mitogen-activated protein kinase kinase...    33   7.0  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score =  186 bits (452), Expect = 8e-46
 Identities = 87/107 (81%), Positives = 88/107 (82%)
 Frame = +3

Query: 489 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 668
           SK+  T    R  RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP
Sbjct: 2   SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61

Query: 669 CRLPDTCPPFSLREAWRFLIXHAVXISXRCXSFAPXWACVHEPPVXP 809
           CRLPDTCPPFSLREAWRFLI HAV IS RC SFAP WA    PP  P
Sbjct: 62  CRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSP 108


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score =  126 bits (303), Expect = 9e-28
 Identities = 73/120 (60%), Positives = 78/120 (65%)
 Frame = +3

Query: 321 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRP 500
           R   +C  G +PLPRSLTR ARSFGCGERY+LT           G   E T  +  SK  
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEE 76

Query: 501 GTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 680
               RPR  RFSIGSAPLTSI K DAQ+ GGETRQDYKD RRFPL APSCALLF P  LP
Sbjct: 77  ---IRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLP 133


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 95.1 bits (226), Expect = 2e-18
 Identities = 45/54 (83%), Positives = 47/54 (87%)
 Frame = +3

Query: 507 VKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 668
           V+ PR  RFSIGSAPLTSITK DAQ+ GGETRQDYKDTRRFPL APSCALLF P
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97


>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides capillosus ATCC 29799|Rep: Putative
           uncharacterized protein - Bacteroides capillosus ATCC
           29799
          Length = 37

 Score = 71.3 bits (167), Expect = 3e-11
 Identities = 33/37 (89%), Positives = 34/37 (91%)
 Frame = +2

Query: 647 VRSPVPTLPLTGYLSAFLPSGSVALSHXSRCXYLXSV 757
           +RSPVPTLPLTGYLSAFLPSGSVALSH SRC YL SV
Sbjct: 1   MRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV 37


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 64.5 bits (150), Expect = 3e-09
 Identities = 30/38 (78%), Positives = 30/38 (78%)
 Frame = -3

Query: 497 PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 384
           P    LLTCSF  YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 58.0 bits (134), Expect = 3e-07
 Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +3

Query: 297 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 464
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 114

 Score = 58.0 bits (134), Expect = 3e-07
 Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
 Frame = +3

Query: 396 CGERYQLTQRR*YG--YPQNQGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITK 569
           C  R Q    R  G  +P+N  I  +R   + + + P T        F   S PLT+ITK
Sbjct: 22  CCHRQQCLLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITK 81

Query: 570 IDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 668
           I  Q +  +T+ +YK T  FPL++PS +LLF P
Sbjct: 82  IYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFPP 114


>UniRef50_UPI00015C640B Cluster: hypothetical protein
           CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
           Citrobacter koseri ATCC BAA-895
          Length = 99

 Score = 50.0 bits (114), Expect = 8e-05
 Identities = 33/91 (36%), Positives = 39/91 (42%)
 Frame = -1

Query: 853 GGXQDDSYRIRXQRSG*TGGSCTQAQXGANDXHRXEIXTA*XMRKRHASRREKGGQVSGK 674
           G  QDDSYR         G                +  +    +     + +K  QVSGK
Sbjct: 9   GWTQDDSYRKGRSSRAERGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQVSGK 68

Query: 673 RQGRNRRAHEGASRGKRLVSL*SCRVSPPLT 581
           RQGRNRRAHEGA+  K   SL      PPLT
Sbjct: 69  RQGRNRRAHEGAAGEKSPASLSPVGFRPPLT 99


>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
           CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
           Citrobacter koseri ATCC BAA-895
          Length = 125

 Score = 46.0 bits (104), Expect = 0.001
 Identities = 29/76 (38%), Positives = 30/76 (39%)
 Frame = +3

Query: 582 VRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIXHAVXISXRCX 761
           VR GETRQD K         P       P       PPFSL  +          IS RC 
Sbjct: 23  VRSGETRQDLKIITVSDESLPLALSCSNPAVSRIPVPPFSLAGSVALSHSSHSGISARCR 82

Query: 762 SFAPXWACVHEPPVXP 809
           SFAP WA    PP  P
Sbjct: 83  SFAPSWAVSKNPPFSP 98



 Score = 42.3 bits (95), Expect = 0.015
 Identities = 31/71 (43%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +1

Query: 610 IKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGAFSXLTLXVSXFGV-XRSLQXG-P 783
           +KI  VS   LP ALSCS+PA  RIPV   PF   G+ +      S      RS      
Sbjct: 32  LKIITVSDESLPLALSCSNPAVSRIPV--PPFSLAGSVALSHSSHSGISARCRSFAPSWA 89

Query: 784 VCTNPPFXPTA 816
           V  NPPF PTA
Sbjct: 90  VSKNPPFSPTA 100


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +2

Query: 416 HSKAVIRLSTESGDNAGKNM 475
           HSKAVIRLSTESGDNAGKNM
Sbjct: 40  HSKAVIRLSTESGDNAGKNM 59


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 41.9 bits (94), Expect = 0.020
 Identities = 22/41 (53%), Positives = 26/41 (63%)
 Frame = +1

Query: 223 INKLTTTIAFILCFRFRXEVWEVFSALMNRPTRGERRFAYW 345
           +++LT      L  RF      V +ALMNRPTRGERRFAYW
Sbjct: 1   MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.081
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -1

Query: 367 ERGSGRAPNTQTASPRALADSLMQ 296
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4;
           Burkholderia|Rep: Putative uncharacterized protein -
           Burkholderia pseudomallei (strain 668)
          Length = 755

 Score = 34.7 bits (76), Expect = 3.0
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = -1

Query: 727 MRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 623
           +R+R A RR  GG+  G+R+GRNR+  +   RG+R
Sbjct: 355 VRRRAAPRRRHGGEWRGRRRGRNRKRRQ--QRGQR 387


>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
           precursor; n=2; Polaromonas|Rep: Putative
           uncharacterized protein precursor - Polaromonas sp.
           (strain JS666 / ATCC BAA-500)
          Length = 268

 Score = 33.9 bits (74), Expect = 5.3
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -3

Query: 506 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 384
           G W  +G  L    L++    LI+W+  LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201


>UniRef50_Q02779 Cluster: Mitogen-activated protein kinase kinase
           kinase 10; n=21; Euteleostomi|Rep: Mitogen-activated
           protein kinase kinase kinase 10 - Homo sapiens (Human)
          Length = 954

 Score = 33.5 bits (73), Expect = 7.0
 Identities = 21/68 (30%), Positives = 34/68 (50%)
 Frame = -3

Query: 698 ERRTGIR*AAGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPAT 519
           ER  G+    GS+Q S+     G++P    +  GFA+ +   +F +A  GG +   +P +
Sbjct: 574 ERLKGL--GEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYS 631

Query: 518 RPFYGSWP 495
            P Y S P
Sbjct: 632 TPSYLSVP 639


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 793,387,778
Number of Sequences: 1657284
Number of extensions: 15688816
Number of successful extensions: 43407
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 41203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43367
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76243001646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)