Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_C08
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    27   3.4  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   6.0  
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    26   7.9  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   7.9  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   7.9  

>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 197 SNSITNFTNKAFFSLHSSCGLSKLIKCILSCLDPINPX*REIRGRG-TNNLNLKDSTYKG 21
           S S  N+      +L ++C ++ +++C+ +C D   P    ++GRG   N+N K+    G
Sbjct: 63  SLSYENYQPIGLTNLGNTCYMNCVLQCLFACKDLTIPM---LQGRGLLQNINTKNPLGTG 119

Query: 20  NR 15
            +
Sbjct: 120 GK 121


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 718 RHASRREKGGQV---SGKRQGRNRRAHEGASR 632
           +   RRE+GG+V   SG+ + R+   HE  SR
Sbjct: 95  KRGGRRERGGRVHGDSGRLRSRSPSPHEARSR 126


>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 25  LYVESLRFKLLVPRPRISLX*GLIGSRHDKIHL 123
           LY  SLR K  +P PRI    G+I     K+H+
Sbjct: 219 LYQSSLRVKTAIPHPRIM---GIIRECGGKMHM 248


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 193 IASQISQIKHFFHCILVVVCPNSSNVSYHVWIQLTLXK 80
           + S++S+IKH  +C L     NSS VS  V + L L +
Sbjct: 420 VNSELSRIKHLLNCFL-----NSSTVSLDVSMVLELLR 452


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +2

Query: 557 EHHKNRRSSQRWRNPTGL*RYQAF----PPGSSLVRSPVPTLPLTGY 685
           ++HKNR+S+     P GL  Y+A     PPG     +      L GY
Sbjct: 389 DYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGY 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,154
Number of Sequences: 5004
Number of extensions: 58495
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)