Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_C07
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    30   0.37 
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    27   2.6  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    27   4.6  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    27   4.6  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   8.0  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   8.0  

>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 23/92 (25%), Positives = 38/92 (41%)
 Frame = +2

Query: 251 QGDNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDTGLDQP 430
           + +  P+AP      + P  +D   L P  +  R V N   + + I  SH      +DQ 
Sbjct: 83  EANESPKAPRNDYLQVTPKTVDKSLLGPTPQLSRRVLNLLEDMSPIADSH------VDQI 136

Query: 431 IESHRNTRDLRFLYPRGKLPVPTLPPFNPKPI 526
            +   NT ++          +PT P  NP+P+
Sbjct: 137 SDIKHNTSEI------SSTMIPTTPSKNPEPV 162


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 545 RYRRHASEDQEELRHYDEHFLIPRDIF 625
           RY+R ASE  E L  +  HF I   +F
Sbjct: 99  RYKRDASESDELLNEFSNHFGISDPLF 125


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
 Frame = +2

Query: 299 LPSKIDDVQLDPN--RRYVRSVTNPENNEASIEHSHHTVDTGLDQPIESHRNTRDLRFLY 472
           LP + +   L+ N  R Y    TN  +N  +   +     + L    ES  N      +Y
Sbjct: 395 LPGEANFQSLNQNNVRNYPFYQTNQGSNPPAKRFTQEPPSSSLYSLSESSINYSTQSPMY 454

Query: 473 PRGKLPVPTLPPFNPKPIYID 535
                P P+ PPF+  PIY D
Sbjct: 455 YNYNYPQPSFPPFH--PIYND 473


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = -1

Query: 390 SMDASLFSGLVTL--RTYLRFGSSCTSSIFEGRIGWSAVLGARGTLS 256
           S + SLFS       R   RF        F G++GW  +LG+    S
Sbjct: 347 SSNTSLFSNFTFFLSREVPRFSLEFVIRAFGGKVGWDPILGSGSPFS 393


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 320  RRRFSKEESDGLQYLAHEE-HCHLDTAIAVP 231
            RRR+SK+ S  L+ + +EE H  L + I +P
Sbjct: 946  RRRYSKQHSKHLESVVYEEYHPILHSNITIP 976


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 23/85 (27%), Positives = 37/85 (43%)
 Frame = +3

Query: 324 SSIQTEGMFAVSPIQKITRRPLNIHIIQLILDLTSRSRATVTQGTCGFCTLEGNCLFQRF 503
           SSI    +     I + T R ++I ++ L ++LTS S     + T     L G  LF   
Sbjct: 326 SSISFAALTLFGLIPEFTNRRMDIALVGLAINLTSGSLIAFAKPT--HAQLAGYWLF--- 380

Query: 504 LRLTPSQYILIWETVTDDMRRRIKK 578
             ++P  YI I   ++ +     KK
Sbjct: 381 -GISPIPYICILSCISSNSAGHTKK 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,507
Number of Sequences: 5004
Number of extensions: 62299
Number of successful extensions: 208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)