Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_C04
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.40 
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   6.5  

>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 706 PFPXXPPPPXXPLPKXPTPXXXGWANPXXPXQXXPG 813
           P P  PP P  P+P+ P P      +   P +  PG
Sbjct: 102 PLPREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLPG 137



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 706 PFPXXPPPPXXPLPKXPTPXXXGWANPXXP 795
           P P  PP P  P+P+ P P      N   P
Sbjct: 118 PLPGEPPLPDEPVPEEPLPGEPPLPNEPVP 147



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +1

Query: 706 PFPXXPPPPXXPLPKXPTPXXXGWANPXXPXQXXP 810
           P P  P P   PLP  P P       P  P +  P
Sbjct: 113 PVPEEPLPGEPPLPDEPVPEEPLPGEPPLPNEPVP 147


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 526 LPVPXPXXPXARXSGCGXRYHLPPK 600
           +PVP P     +   CG  Y L PK
Sbjct: 581 IPVPRPRVDLTQCKSCGPSYRLLPK 605


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,562,302
Number of Sequences: 5004
Number of extensions: 16671
Number of successful extensions: 49
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)