Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_C04
         (925 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80743-1|AAB91441.1|  556|Homo sapiens CAGH32 protein.                 32   3.4  
AY044869-1|AAK97789.1| 3124|Homo sapiens p400 SWI2/SNF2-related ...    32   3.4  
AB058721-1|BAB47447.1| 1157|Homo sapiens KIAA1818 protein protein.     32   3.4  
AY476736-1|AAS58324.1|  244|Homo sapiens heparan sulfate 3-O-sul...    31   4.5  
AF105378-1|AAD30210.2|  456|Homo sapiens heparan sulfate 3-O-sul...    31   4.5  
AK127078-1|BAC86815.1|  844|Homo sapiens protein ( Homo sapiens ...    31   5.9  

>U80743-1|AAB91441.1|  556|Homo sapiens CAGH32 protein.
          Length = 556

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +1

Query: 706 PFPXXPPPPXXPLPKXPTPXXXGWANPXXPXQXXP 810
           P P  PPPP  P P  P P   G   P  P    P
Sbjct: 84  PQPQPPPPPQQPPPPLPQPQAAGSQPPAGPPAVQP 118


>AY044869-1|AAK97789.1| 3124|Homo sapiens p400 SWI2/SNF2-related
            protein protein.
          Length = 3124

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +1

Query: 706  PFPXXPPPPXXPLPKXPTPXXXGWANPXXPXQXXP 810
            P P  PPPP  P P  P P   G   P  P    P
Sbjct: 2510 PQPQPPPPPQQPPPPLPQPQAAGSQPPAGPPAVQP 2544


>AB058721-1|BAB47447.1| 1157|Homo sapiens KIAA1818 protein protein.
          Length = 1157

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +1

Query: 706 PFPXXPPPPXXPLPKXPTPXXXGWANPXXPXQXXP 810
           P P  PPPP  P P  P P   G   P  P    P
Sbjct: 543 PQPQPPPPPQQPPPPLPQPQAAGSQPPAGPPAVQP 577


>AY476736-1|AAS58324.1|  244|Homo sapiens heparan sulfate
           3-O-sulfotransferase-4 protein.
          Length = 244

 Score = 31.5 bits (68), Expect = 4.5
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 703 WPFPXXPPPPXXPLPKXPTP 762
           WP P  PPPP  PL   P P
Sbjct: 4   WPAPPPPPPPPPPLAAPPPP 23


>AF105378-1|AAD30210.2|  456|Homo sapiens heparan sulfate
           3-O-sulfotransferase-4 protein.
          Length = 456

 Score = 31.5 bits (68), Expect = 4.5
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 703 WPFPXXPPPPXXPLPKXPTP 762
           WP P  PPPP  PL   P P
Sbjct: 4   WPAPPPPPPPPPPLAAPPPP 23


>AK127078-1|BAC86815.1|  844|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45135 fis, clone BRAWH3038252, highly  similar
           to Formin 1 isoform IV. ).
          Length = 844

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 721 PPPPXXPLPKXPTPXXXGWANPXXP 795
           PPPP  PLP  P P   G   P  P
Sbjct: 348 PPPPPPPLPNSPAPPNPGGPPPAPP 372


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,024,278
Number of Sequences: 237096
Number of extensions: 1317733
Number of successful extensions: 9721
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8082
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12047931574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)