Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_C04
(925 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 35 0.094
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 31 0.88
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 31 1.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.0
Z68106-4|CAA92128.1| 112|Caenorhabditis elegans Hypothetical pr... 30 2.7
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 6.2
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 6.2
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 34.7 bits (76), Expect = 0.094
Identities = 28/91 (30%), Positives = 31/91 (34%), Gaps = 1/91 (1%)
Frame = +3
Query: 486 PXPPGKG-GXXXGXPSGSPPXXXXRPXXRXRXXVSPPPKGGXTVXXRIRG*PQEKPCXXX 662
P PP KG G P+G P R PPPKG T G PQ+
Sbjct: 64 PPPPPKGTGTPPPPPTGEPQDLSAEEGNASRRP-PPPPKGTGTPPPPPTGEPQDLSGEGN 122
Query: 663 XXQRPXTRXKAPXLAFSXXPPPPXXTPPKXS 755
+RP P PPPP P S
Sbjct: 123 ASRRP----PPPPKGTGSPPPPPTGEPQDLS 149
Score = 31.9 bits (69), Expect = 0.67
Identities = 26/82 (31%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Frame = +3
Query: 486 PXPPGKG-GXXXGXPSGSPPXXXXRPXXRXRXXVSPPPKGGXTVXXRIRG*PQEKPCXXX 662
P PP KG G P+G P R PPPKG T G PQ+
Sbjct: 158 PPPPPKGTGSPPPPPTGEPQDLSTEGNASRRPP--PPPKGTGTPPPPPTGEPQDLSAEGY 215
Query: 663 XXQRPXTRXKAPXLAFSXXPPP 728
+RP K S PPP
Sbjct: 216 ASRRPPPPPKGTG---SPTPPP 234
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 31.5 bits (68), Expect = 0.88
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -3
Query: 761 GVGXFGRGXXGGGGXXGKGQXRGLXTGXGPLXGXXVTG 648
G G G G GGGG G G G G GP G + G
Sbjct: 206 GGGGMGGGGYGGGGDGGYGPSGGYGGGYGPGGGYGMGG 243
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -3
Query: 755 GXFGRGXXGGGGXXGKGQXRGLXTGXGPLXG 663
G G G GGGG G G G G GP G
Sbjct: 198 GGMGGGGYGGGGMGGGGYGGGGDGGYGPSGG 228
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 712 PXXPPPPXXPLPKXPTPXXXGWANPXXP 795
P PPPP P P+ PTP P P
Sbjct: 546 PTPPPPPREPTPREPTPEPEPVREPTPP 573
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/85 (27%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Frame = +3
Query: 486 PXPPGKGGXXXGXPSGSPPXXXXRPXXRXRXXVSPPPKGGXTVXXRIRG*PQEK-PC--X 656
P PPG+ G P PP R + PPP G + P + P
Sbjct: 301 PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP 360
Query: 657 XXXXQRPXTRXKAPXLAFSXXPPPP 731
P +R AP PPPP
Sbjct: 361 GMYPPPPPSRPPAPPSGHGMIPPPP 385
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/85 (27%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Frame = +3
Query: 486 PXPPGKGGXXXGXPSGSPPXXXXRPXXRXRXXVSPPPKGGXTVXXRIRG*PQEK-PC--X 656
P PPG+ G P PP R + PPP G + P + P
Sbjct: 311 PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP 370
Query: 657 XXXXQRPXTRXKAPXLAFSXXPPPP 731
P +R AP PPPP
Sbjct: 371 GMYPPPPPSRPPAPPSGHGMIPPPP 395
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/88 (26%), Positives = 30/88 (34%)
Frame = +3
Query: 486 PXPPGKGGXXXGXPSGSPPXXXXRPXXRXRXXVSPPPKGGXTVXXRIRG*PQEKPCXXXX 665
P PP GG +GSPP P PPP+ G + G P P
Sbjct: 280 PPPPPAGGSPPPPRAGSPPPPPP-PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP----- 333
Query: 666 XQRPXTRXKAPXLAFSXXPPPPXXTPPK 749
Q+ ++P PP PP+
Sbjct: 334 RQKRQAPERSPPTGSPPTGSPPTGRPPR 361
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/89 (26%), Positives = 26/89 (29%), Gaps = 3/89 (3%)
Frame = +3
Query: 498 GKGGXXXGXPSGSPPXXXX---RPXXRXRXXVSPPPKGGXTVXXRIRG*PQEKPCXXXXX 668
G G P+GSPP P PPP G R G P P
Sbjct: 224 GFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRT-GSPPPPPTGSPPP 282
Query: 669 QRPXTRXKAPXLAFSXXPPPPXXTPPKXS 755
P PPPP +PP S
Sbjct: 283 PPAGGSPPPPRAGSPPPPPPPRGSPPTGS 311
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/88 (26%), Positives = 30/88 (34%)
Frame = +3
Query: 486 PXPPGKGGXXXGXPSGSPPXXXXRPXXRXRXXVSPPPKGGXTVXXRIRG*PQEKPCXXXX 665
P PP GG +GSPP P PPP+ G + G P P
Sbjct: 301 PPPPPAGGSPPPPRAGSPPPPPP-PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP----- 354
Query: 666 XQRPXTRXKAPXLAFSXXPPPPXXTPPK 749
Q+ ++P PP PP+
Sbjct: 355 RQKRQAPERSPPTGSPPTGSPPTGRPPR 382
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/89 (26%), Positives = 26/89 (29%), Gaps = 3/89 (3%)
Frame = +3
Query: 498 GKGGXXXGXPSGSPPXXXX---RPXXRXRXXVSPPPKGGXTVXXRIRG*PQEKPCXXXXX 668
G G P+GSPP P PPP G R G P P
Sbjct: 245 GFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRT-GSPPPPPTGSPPP 303
Query: 669 QRPXTRXKAPXLAFSXXPPPPXXTPPKXS 755
P PPPP +PP S
Sbjct: 304 PPAGGSPPPPRAGSPPPPPPPRGSPPTGS 332
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/88 (26%), Positives = 30/88 (34%)
Frame = +3
Query: 486 PXPPGKGGXXXGXPSGSPPXXXXRPXXRXRXXVSPPPKGGXTVXXRIRG*PQEKPCXXXX 665
P PP GG +GSPP P PPP+ G + G P P
Sbjct: 286 PPPPPAGGSPPPPRAGSPPPPPP-PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP----- 339
Query: 666 XQRPXTRXKAPXLAFSXXPPPPXXTPPK 749
Q+ ++P PP PP+
Sbjct: 340 RQKRQAPERSPPTGSPPTGSPPTGRPPR 367
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/89 (26%), Positives = 26/89 (29%), Gaps = 3/89 (3%)
Frame = +3
Query: 498 GKGGXXXGXPSGSPPXXXX---RPXXRXRXXVSPPPKGGXTVXXRIRG*PQEKPCXXXXX 668
G G P+GSPP P PPP G R G P P
Sbjct: 230 GFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRT-GSPPPPPTGSPPP 288
Query: 669 QRPXTRXKAPXLAFSXXPPPPXXTPPKXS 755
P PPPP +PP S
Sbjct: 289 PPAGGSPPPPRAGSPPPPPPPRGSPPTGS 317
>Z68106-4|CAA92128.1| 112|Caenorhabditis elegans Hypothetical
protein F41E7.5 protein.
Length = 112
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -3
Query: 761 GVGXFGRGXXGGGGXXGKGQXRGLXTGXGPLXG 663
G G FGRG GGG G RG G G G
Sbjct: 40 GPGQFGRGGFGGGPGSNYGPGRGGFGGNGGFGG 72
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +3
Query: 492 PPGKGGXXXGXPSG--SPPXXXXRPXXR-XRXXVSPPPKGG 605
P G GG G P+G +PP +P R R +SP K G
Sbjct: 628 PRGPGGGGGGGPTGPPAPPKPPAKPRGRPPRKSISPAVKNG 668
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +3
Query: 492 PPGKGGXXXGXPSG--SPPXXXXRPXXR-XRXXVSPPPKGG 605
P G GG G P+G +PP +P R R +SP K G
Sbjct: 628 PRGPGGGGGGGPTGPPAPPKPPAKPRGRPPRKSISPAVKNG 668
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,613,205
Number of Sequences: 27780
Number of extensions: 150315
Number of successful extensions: 1083
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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