Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_C03
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    62   8e-10
06_03_1078 + 27418886-27419215                                         29   4.9  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 61.7 bits (143), Expect = 8e-10
 Identities = 37/95 (38%), Positives = 45/95 (47%)
 Frame = +2

Query: 197 DDDVAVTGEKISTILKAAAVDVEPYXPGLFAXALEGINVPDLITNXGSGVXXXXXXXXXX 376
           DD + +T EKI+T++KAA + VE Y PGLFA  LE  +V DLI + GSG           
Sbjct: 17  DDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLILSVGSG-GGAAPVAAAA 75

Query: 377 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 481
                                   SDDDMGF LFD
Sbjct: 76  APAAGGGAAAAPAAEEKKEEAKEESDDDMGFSLFD 110


>06_03_1078 + 27418886-27419215
          Length = 109

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 274 ARSVRXSLGRHQCPRPDHQXRLWSGCCSGRWW 369
           +RS R   G  + P P H  R+W+G   G WW
Sbjct: 29  SRSNRAPSGAFRPPDPRHPGRIWTG---GGWW 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,816,954
Number of Sequences: 37544
Number of extensions: 243046
Number of successful extensions: 458
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)