Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_C03
(883 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17886-1|AAA36471.1| 114|Homo sapiens protein ( Human acidic ri... 68 4e-11
CR450339-1|CAG29335.1| 114|Homo sapiens RPLP1 protein. 68 4e-11
BC007590-1|AAH07590.1| 114|Homo sapiens ribosomal protein, larg... 68 4e-11
BC003369-1|AAH03369.1| 114|Homo sapiens ribosomal protein, larg... 68 4e-11
AB061836-1|BAB79474.1| 114|Homo sapiens ribosomal protein P1 pr... 68 4e-11
CR542209-1|CAG47005.1| 114|Homo sapiens RPLP1 protein. 66 2e-10
AY303789-1|AAP68820.1| 113|Homo sapiens acidic ribosomal phosph... 66 2e-10
>M17886-1|AAA36471.1| 114|Homo sapiens protein ( Human acidic
ribosomal phosphoprotein P1 mRNA, complete cds. ).
Length = 114
Score = 68.1 bits (159), Expect = 4e-11
Identities = 38/97 (39%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +2
Query: 197 DDDVAVTGEKISTILKAAAVDVEPYXPGLFAXALEGINVPDLITNXGSG--VXXXXXXXX 370
DD+V VT +KI+ ++KAA V+VEP+ PGLFA AL +N+ LI N G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPA 77
Query: 371 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 481
SDDDMGFGLFD
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>CR450339-1|CAG29335.1| 114|Homo sapiens RPLP1 protein.
Length = 114
Score = 68.1 bits (159), Expect = 4e-11
Identities = 38/97 (39%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +2
Query: 197 DDDVAVTGEKISTILKAAAVDVEPYXPGLFAXALEGINVPDLITNXGSG--VXXXXXXXX 370
DD+V VT +KI+ ++KAA V+VEP+ PGLFA AL +N+ LI N G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPA 77
Query: 371 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 481
SDDDMGFGLFD
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>BC007590-1|AAH07590.1| 114|Homo sapiens ribosomal protein, large,
P1 protein.
Length = 114
Score = 68.1 bits (159), Expect = 4e-11
Identities = 38/97 (39%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +2
Query: 197 DDDVAVTGEKISTILKAAAVDVEPYXPGLFAXALEGINVPDLITNXGSG--VXXXXXXXX 370
DD+V VT +KI+ ++KAA V+VEP+ PGLFA AL +N+ LI N G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPA 77
Query: 371 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 481
SDDDMGFGLFD
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>BC003369-1|AAH03369.1| 114|Homo sapiens ribosomal protein, large,
P1 protein.
Length = 114
Score = 68.1 bits (159), Expect = 4e-11
Identities = 38/97 (39%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +2
Query: 197 DDDVAVTGEKISTILKAAAVDVEPYXPGLFAXALEGINVPDLITNXGSG--VXXXXXXXX 370
DD+V VT +KI+ ++KAA V+VEP+ PGLFA AL +N+ LI N G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPA 77
Query: 371 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 481
SDDDMGFGLFD
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>AB061836-1|BAB79474.1| 114|Homo sapiens ribosomal protein P1
protein.
Length = 114
Score = 68.1 bits (159), Expect = 4e-11
Identities = 38/97 (39%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +2
Query: 197 DDDVAVTGEKISTILKAAAVDVEPYXPGLFAXALEGINVPDLITNXGSG--VXXXXXXXX 370
DD+V VT +KI+ ++KAA V+VEP+ PGLFA AL +N+ LI N G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPA 77
Query: 371 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 481
SDDDMGFGLFD
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>CR542209-1|CAG47005.1| 114|Homo sapiens RPLP1 protein.
Length = 114
Score = 66.1 bits (154), Expect = 2e-10
Identities = 37/97 (38%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +2
Query: 197 DDDVAVTGEKISTILKAAAVDVEPYXPGLFAXALEGINVPDLITNXGSG--VXXXXXXXX 370
DD+V VT +KI+ ++KAA V+VEP+ PGLFA AL +N+ LI + G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICDVGAGGPAPAAGAAPA 77
Query: 371 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 481
SDDDMGFGLFD
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>AY303789-1|AAP68820.1| 113|Homo sapiens acidic ribosomal
phosphoprotein P1 protein.
Length = 113
Score = 65.7 bits (153), Expect = 2e-10
Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Frame = +2
Query: 197 DDDVAVTGEKISTILKAAAVDVEPYXPGLFAXALEGINVPDLITNXGSG--VXXXXXXXX 370
DD+V VT +KI+ ++KAA V+VEP+ PGLFA AL +N+ LI N G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPA 77
Query: 371 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLF 478
SDDDMGFGLF
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLF 113
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,580,698
Number of Sequences: 237096
Number of extensions: 1271123
Number of successful extensions: 1490
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1481
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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