Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_C03
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    80   2e-15
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    77   2e-14
AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear recep...    29   3.3  
AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormo...    29   3.3  
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 44/95 (46%), Positives = 53/95 (55%)
 Frame = +2

Query: 197 DDDVAVTGEKISTILKAAAVDVEPYXPGLFAXALEGINVPDLITNXGSGVXXXXXXXXXX 376
           DD+VA+TGEKI+T+LKAA V+ EPY PGLFA ALEG++V +LIT+  SG           
Sbjct: 18  DDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSSGA-GSGPAPAAA 76

Query: 377 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 481
                                   SDDDMGFGLFD
Sbjct: 77  AAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 43/95 (45%), Positives = 52/95 (54%)
 Frame = +2

Query: 197 DDDVAVTGEKISTILKAAAVDVEPYXPGLFAXALEGINVPDLITNXGSGVXXXXXXXXXX 376
           DD+VA+TGEKI+T+LKAA V+ EP  PGLFA ALEG++V +LIT+  SG           
Sbjct: 18  DDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLITSVSSGA-GSGPAPAAA 76

Query: 377 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 481
                                   SDDDMGFGLFD
Sbjct: 77  AAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111


>AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear receptor
           NHR-110 protein.
          Length = 412

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
 Frame = +1

Query: 232 HHLESGGCRCRAIXARSVRXSLGRHQC---PRPDHQXRLWSGC---CSGRWW 369
           H +  G   CRA  A     S+ + +C   PRP H+ R  S C     GRW+
Sbjct: 22  HGIHFGAYTCRACAAFFRIVSISKKKCHFSPRPTHKCRNNSNCKPKIDGRWF 73


>AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 110, isoform b protein.
          Length = 424

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
 Frame = +1

Query: 232 HHLESGGCRCRAIXARSVRXSLGRHQC---PRPDHQXRLWSGC---CSGRWW 369
           H +  G   CRA  A     S+ + +C   PRP H+ R  S C     GRW+
Sbjct: 34  HGIHFGAYTCRACAAFFRIVSISKSKCHFSPRPTHKCRNNSNCKPKIDGRWF 85


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 24/90 (26%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
 Frame = +2

Query: 221 EKISTILKAAAVDVEPYXPGLFAXALEGINVPDLITNXGSG---VXXXXXXXXXXXXXXX 391
           + +  IL A  VD +     L    L G  V +LI    +G   V               
Sbjct: 21  DDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAGLVSVSGGAAPAAAAAPAAG 80

Query: 392 XXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 481
                              SDDDMGFGLFD
Sbjct: 81  GAAPAADSKPAKKEEPKEESDDDMGFGLFD 110


>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 449 SDDDMGFGLFD 481
           SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 449 SDDDMGFGLFD 481
           SDDDMGFGLFD
Sbjct: 97  SDDDMGFGLFD 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,740,641
Number of Sequences: 27780
Number of extensions: 177130
Number of successful extensions: 313
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)